Hb_000366_020

Information

Type -
Description -
Location Contig366: 15967-20114
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37668: 18941-28143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_020 0.0 - - -
2 Hb_060391_010 0.1800594913 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_050034_010 0.1982002218 - - PREDICTED: cullin-1 [Jatropha curcas]
4 Hb_007456_020 0.2145517486 - - unknown [Lotus japonicus]
5 Hb_005271_230 0.2220057011 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
6 Hb_181441_010 0.2225002436 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
7 Hb_000566_180 0.2247747401 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
8 Hb_026337_010 0.2298047174 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
9 Hb_012490_110 0.2350876367 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
10 Hb_096998_010 0.2392107354 - - hypothetical protein JCGZ_07944 [Jatropha curcas]
11 Hb_001146_050 0.239687205 - - -
12 Hb_062558_010 0.2399857923 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
13 Hb_102591_010 0.2431206775 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
14 Hb_007718_020 0.2446410126 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
15 Hb_004116_170 0.2481813646 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
16 Hb_000168_010 0.2498132834 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
17 Hb_006422_030 0.2508812214 - - -
18 Hb_146510_010 0.2511835302 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
19 Hb_169656_010 0.2527486997 - - protein phosphatase, putative [Ricinus communis]
20 Hb_005892_020 0.2530817692 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000366_020 Hb_000366_020 Hb_060391_010 Hb_060391_010 Hb_000366_020--Hb_060391_010 Hb_050034_010 Hb_050034_010 Hb_000366_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_000366_020--Hb_007456_020 Hb_005271_230 Hb_005271_230 Hb_000366_020--Hb_005271_230 Hb_181441_010 Hb_181441_010 Hb_000366_020--Hb_181441_010 Hb_000566_180 Hb_000566_180 Hb_000366_020--Hb_000566_180 Hb_102591_010 Hb_102591_010 Hb_060391_010--Hb_102591_010 Hb_165402_010 Hb_165402_010 Hb_060391_010--Hb_165402_010 Hb_060391_010--Hb_050034_010 Hb_000679_200 Hb_000679_200 Hb_060391_010--Hb_000679_200 Hb_060391_010--Hb_007456_020 Hb_050034_010--Hb_007456_020 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_007456_020--Hb_099116_010 Hb_007456_020--Hb_102591_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_003780_020 Hb_003780_020 Hb_007456_020--Hb_003780_020 Hb_007456_020--Hb_000168_010 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_005271_230--Hb_000566_180 Hb_005271_230--Hb_050034_010 Hb_005271_230--Hb_060391_010 Hb_006910_050 Hb_006910_050 Hb_005271_230--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_005271_230--Hb_002611_030 Hb_181441_010--Hb_165402_010 Hb_050912_010 Hb_050912_010 Hb_181441_010--Hb_050912_010 Hb_181328_010 Hb_181328_010 Hb_181441_010--Hb_181328_010 Hb_009247_010 Hb_009247_010 Hb_181441_010--Hb_009247_010 Hb_077573_010 Hb_077573_010 Hb_181441_010--Hb_077573_010 Hb_006541_040 Hb_006541_040 Hb_181441_010--Hb_006541_040 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_000566_180--Hb_050034_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77113 8.13756 5.14347 21.3077 0.0832147 20.0187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88379 1.47973 0.522046 15.3666 12.317

CAGE analysis