Hb_000366_040

Information

Type -
Description -
Location Contig366: 31636-33255
Sequence    

Annotation

kegg
ID cit:102626396
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012078776.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067KJF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37671: 31722-32058 , PASA_asmbl_37672: 32932-33204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_002063_020 0.0666994543 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
3 Hb_000352_190 0.067713176 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
4 Hb_000388_090 0.0768221295 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_004712_130 0.0779390942 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
6 Hb_002099_080 0.0782358605 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
7 Hb_005736_020 0.0820947445 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
8 Hb_001157_240 0.0833839449 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_007820_010 0.0863089324 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
10 Hb_002055_040 0.0865558556 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
11 Hb_000094_070 0.0868057612 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_005686_090 0.0885633133 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
13 Hb_062226_070 0.0895281628 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
14 Hb_003910_060 0.0907736362 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
15 Hb_000204_120 0.0917764093 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
16 Hb_002316_160 0.0923817728 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
17 Hb_008959_010 0.0943911473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006711_100 0.0943919268 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
19 Hb_028912_050 0.0951427876 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
20 Hb_003943_110 0.0953726342 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000366_040 Hb_000366_040 Hb_002063_020 Hb_002063_020 Hb_000366_040--Hb_002063_020 Hb_000352_190 Hb_000352_190 Hb_000366_040--Hb_000352_190 Hb_000388_090 Hb_000388_090 Hb_000366_040--Hb_000388_090 Hb_004712_130 Hb_004712_130 Hb_000366_040--Hb_004712_130 Hb_002099_080 Hb_002099_080 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_002063_020--Hb_000388_090 Hb_002063_020--Hb_002099_080 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_002063_020--Hb_000352_190 Hb_028912_050 Hb_028912_050 Hb_000352_190--Hb_028912_050 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_004225_050 Hb_004225_050 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_000388_090--Hb_005736_020 Hb_000388_090--Hb_028912_050 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_000497_300 Hb_000497_300 Hb_004712_130--Hb_000497_300 Hb_001999_090 Hb_001999_090 Hb_004712_130--Hb_001999_090 Hb_010344_050 Hb_010344_050 Hb_004712_130--Hb_010344_050 Hb_027472_070 Hb_027472_070 Hb_004712_130--Hb_027472_070 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_007820_010 Hb_007820_010 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88831 2.15267 1.22664 1.78641 1.79177 2.20341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915052 1.97979 3.39101 2.17101 3.49361

CAGE analysis