Hb_000366_090

Information

Type -
Description -
Location Contig366: 95665-98013
Sequence    

Annotation

kegg
ID cit:102618238
description pentatricopeptide repeat-containing protein At4g32430, mitochondrial-like
nr
ID XP_012078772.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
swissprot
ID Q84MA3
description Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1
trembl
ID A0A067K8G1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13317 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
2 Hb_168319_030 0.0597349372 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000033_020 0.0809070085 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000117_090 0.084654214 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
5 Hb_000019_060 0.0895400981 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
6 Hb_000110_320 0.0897250393 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
7 Hb_004375_150 0.093857232 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
8 Hb_019263_020 0.0965789541 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
9 Hb_002284_200 0.0967196233 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
10 Hb_011030_020 0.0999943855 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
11 Hb_002235_280 0.1007375135 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
12 Hb_007645_080 0.1025966703 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
13 Hb_034406_020 0.1028560647 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
14 Hb_002056_060 0.1064019939 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_000125_030 0.108629286 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
16 Hb_002878_020 0.1086722281 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_019654_090 0.1094758203 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
18 Hb_021409_030 0.1095097224 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
19 Hb_000563_250 0.1097879837 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
20 Hb_004607_030 0.1112215733 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000366_090 Hb_000366_090 Hb_168319_030 Hb_168319_030 Hb_000366_090--Hb_168319_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000117_090 Hb_000117_090 Hb_000366_090--Hb_000117_090 Hb_000019_060 Hb_000019_060 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_004375_150 Hb_004375_150 Hb_000366_090--Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_000307_030 Hb_000307_030 Hb_000033_020--Hb_000307_030 Hb_000033_020--Hb_168319_030 Hb_000033_020--Hb_000117_090 Hb_000033_020--Hb_004375_150 Hb_000009_450 Hb_000009_450 Hb_000033_020--Hb_000009_450 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_001956_070 Hb_001956_070 Hb_000110_320--Hb_001956_070 Hb_000110_320--Hb_000117_090 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_004375_150--Hb_000009_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49384 1.67617 0.865554 0.64371 0.823878 1.39126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70174 4.13618 4.4188 1.13492 1.04212

CAGE analysis