Hb_000366_110

Information

Type -
Description -
Location Contig366: 101558-106555
Sequence    

Annotation

kegg
ID vvi:100257730
description signal peptidase complex catalytic subunit SEC11A
nr
ID XP_012078770.1
description PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
swissprot
ID Q9WTR7
description Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3
trembl
ID A0A067KJE7
description Signal peptidase I OS=Jatropha curcas GN=JCGZ_13315 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptidase complex catalytic subunit sec11a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37680: 101549-106553
cDNA
(Sanger)
(ID:Location)		 028_G21r.ab1: 99283-100911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_110 0.0 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
2 Hb_000069_140 0.1040636504 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
3 Hb_000272_070 0.108360714 - - snare protein YKt [Hevea brasiliensis]
4 Hb_000193_200 0.1124247981 - - rotamase, putative [Ricinus communis]
5 Hb_000042_200 0.1136227294 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
6 Hb_001191_090 0.1137020173 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
7 Hb_000320_180 0.1150235181 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
8 Hb_003053_030 0.1155582624 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
9 Hb_008544_010 0.1159702051 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
10 Hb_002631_020 0.1167955503 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
11 Hb_009421_040 0.1170073839 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
12 Hb_000995_040 0.118244865 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004156_040 0.1198447563 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
14 Hb_007317_160 0.1209579137 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
15 Hb_006816_210 0.1222078579 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
16 Hb_027073_050 0.1231452997 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
17 Hb_001687_040 0.1244573778 - - actin-depolymerizing factor [Hevea brasiliensis]
18 Hb_010812_010 0.1253835294 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
19 Hb_000173_220 0.1255195332 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
20 Hb_006452_040 0.1257265709 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000366_110 Hb_000366_110 Hb_000069_140 Hb_000069_140 Hb_000366_110--Hb_000069_140 Hb_000272_070 Hb_000272_070 Hb_000366_110--Hb_000272_070 Hb_000193_200 Hb_000193_200 Hb_000366_110--Hb_000193_200 Hb_000042_200 Hb_000042_200 Hb_000366_110--Hb_000042_200 Hb_001191_090 Hb_001191_090 Hb_000366_110--Hb_001191_090 Hb_000320_180 Hb_000320_180 Hb_000366_110--Hb_000320_180 Hb_000260_200 Hb_000260_200 Hb_000069_140--Hb_000260_200 Hb_002391_220 Hb_002391_220 Hb_000069_140--Hb_002391_220 Hb_012539_020 Hb_012539_020 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_001424_020 Hb_001424_020 Hb_000069_140--Hb_001424_020 Hb_000270_720 Hb_000270_720 Hb_000069_140--Hb_000270_720 Hb_006573_220 Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_001687_040 Hb_001687_040 Hb_000272_070--Hb_001687_040 Hb_000398_160 Hb_000398_160 Hb_000272_070--Hb_000398_160 Hb_000069_100 Hb_000069_100 Hb_000272_070--Hb_000069_100 Hb_003561_030 Hb_003561_030 Hb_000272_070--Hb_003561_030 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180 Hb_002107_120 Hb_002107_120 Hb_000193_200--Hb_002107_120 Hb_003376_130 Hb_003376_130 Hb_000193_200--Hb_003376_130 Hb_000193_200--Hb_000069_100 Hb_000224_090 Hb_000224_090 Hb_000193_200--Hb_000224_090 Hb_003053_030 Hb_003053_030 Hb_000193_200--Hb_003053_030 Hb_012265_010 Hb_012265_010 Hb_000193_200--Hb_012265_010 Hb_033153_060 Hb_033153_060 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_138585_050 Hb_138585_050 Hb_000320_180--Hb_138585_050 Hb_000320_180--Hb_004459_040 Hb_024714_050 Hb_024714_050 Hb_000320_180--Hb_024714_050 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4006 0.721656 4.76511 15.8292 15.6088 14.2356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.703 45.3701 26.989 8.6921 12.4301

CAGE analysis