Hb_000367_020

Information

Type -
Description -
Location Contig367: 44228-52025
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05850g
description POPTRDRAFT_661800, POPTRDRAFT_661849; hypothetical protein
nr
ID XP_012080360.1
description PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K533
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11707 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37725: 43052-43322 , PASA_asmbl_37726: 44279-45352 , PASA_asmbl_37727: 45831-46266 , PASA_asmbl_37728: 46289-52293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_020 0.0 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
2 Hb_021596_010 0.0655038456 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
3 Hb_001951_100 0.0682331175 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
4 Hb_008686_020 0.0751307006 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
5 Hb_005649_080 0.0778337487 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
6 Hb_000154_130 0.0805074683 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
7 Hb_001054_120 0.0842385016 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
8 Hb_015183_080 0.0882789328 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_012490_010 0.0887380254 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
10 Hb_004551_020 0.0888890556 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
11 Hb_000008_280 0.0889801211 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_003124_270 0.0894827776 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
13 Hb_000844_050 0.0896059329 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
14 Hb_004696_070 0.0898855438 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
15 Hb_000059_230 0.0900634116 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_000358_220 0.0915457097 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
17 Hb_000445_130 0.0920030855 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
18 Hb_003047_020 0.0922823686 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
19 Hb_001226_110 0.0924789848 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
20 Hb_002928_190 0.094412178 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_020 Hb_000367_020 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_001951_100 Hb_001951_100 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120 Hb_003047_020 Hb_003047_020 Hb_021596_010--Hb_003047_020 Hb_000003_410 Hb_000003_410 Hb_021596_010--Hb_000003_410 Hb_000958_050 Hb_000958_050 Hb_021596_010--Hb_000958_050 Hb_005408_030 Hb_005408_030 Hb_021596_010--Hb_005408_030 Hb_021596_010--Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_012490_010 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_005649_080--Hb_002928_190 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_170077_010 Hb_170077_010 Hb_005649_080--Hb_170077_010 Hb_020805_150 Hb_020805_150 Hb_005649_080--Hb_020805_150 Hb_000358_220 Hb_000358_220 Hb_005649_080--Hb_000358_220 Hb_003939_060 Hb_003939_060 Hb_005649_080--Hb_003939_060 Hb_000154_130--Hb_000445_130 Hb_007012_040 Hb_007012_040 Hb_000154_130--Hb_007012_040 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_003124_270 Hb_003124_270 Hb_000154_130--Hb_003124_270 Hb_000154_130--Hb_001951_100 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24228 9.91474 4.23442 5.6082 2.62542 3.11857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55195 1.54143 3.30286 4.3641 9.36056

CAGE analysis