Hb_000367_090

Information

Type -
Description -
Location Contig367: 93271-97856
Sequence    

Annotation

kegg
ID tcc:TCM_014164
description Leucine-rich repeat family protein isoform 1
nr
ID XP_012080354.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
swissprot
ID B9F655
description Plant intracellular Ras-group-related LRR protein 7 OS=Oryza sativa subsp. japonica GN=IRL7 PE=2 SV=1
trembl
ID A0A067KHK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11695 PE=4 SV=1
Gene Ontology
ID GO:0005515
description plant intracellular ras-group-related lrr protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37735: 93225-97585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_090 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
2 Hb_000046_170 0.068259911 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
3 Hb_028487_160 0.0691796525 - - clathrin assembly protein, putative [Ricinus communis]
4 Hb_000227_160 0.0717163135 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
5 Hb_002357_060 0.0721193123 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
6 Hb_004705_170 0.0756928224 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
7 Hb_189216_010 0.079124756 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
8 Hb_000165_080 0.0793381146 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_006452_120 0.0806869671 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_000167_010 0.0811483512 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005648_010 0.0821597823 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
12 Hb_007472_070 0.0832137208 - - cir, putative [Ricinus communis]
13 Hb_000684_500 0.0840494094 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_002477_290 0.0843081703 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
15 Hb_000841_050 0.0846187028 - - hypothetical protein L484_019972 [Morus notabilis]
16 Hb_000363_190 0.0847721775 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_008748_030 0.0849801568 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000778_010 0.0853430782 - - hypothetical protein [Bacillus subtilis]
19 Hb_000025_190 0.0855190369 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
20 Hb_000983_050 0.0861455745 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000367_090 Hb_000367_090 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000367_090--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000367_090--Hb_000227_160 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_004607_070 Hb_004607_070 Hb_000046_170--Hb_004607_070 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080 Hb_028487_160--Hb_000227_160 Hb_006452_120 Hb_006452_120 Hb_028487_160--Hb_006452_120 Hb_008748_030 Hb_008748_030 Hb_028487_160--Hb_008748_030 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_008289_040 Hb_008289_040 Hb_028487_160--Hb_008289_040 Hb_000227_160--Hb_008748_030 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_005648_010 Hb_005648_010 Hb_002357_060--Hb_005648_010 Hb_023001_040 Hb_023001_040 Hb_002357_060--Hb_023001_040 Hb_004880_150 Hb_004880_150 Hb_002357_060--Hb_004880_150 Hb_002357_060--Hb_000179_270 Hb_000167_010 Hb_000167_010 Hb_002357_060--Hb_000167_010 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_189216_010--Hb_000778_010 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39355 7.31782 7.87138 13.1437 3.13642 5.26223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81896 7.49282 5.5437 11.1893 8.50246

CAGE analysis