Hb_000367_140

Information

Type -
Description -
Location Contig367: 131913-145065
Sequence    

Annotation

kegg
ID rcu:RCOM_1470510
description S-locus-specific glycoprotein S6 precursor, putative
nr
ID XP_002514693.1
description S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID B9RLS4
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1470510 PE=3 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_140 0.0 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
2 Hb_000699_080 0.1793655828 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
3 Hb_000360_010 0.187331339 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000359_070 0.191647904 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
5 Hb_003336_020 0.1962946872 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
6 Hb_003905_030 0.1994454328 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_156850_020 0.2035153106 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
8 Hb_106552_030 0.2046140677 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
9 Hb_000038_020 0.2050942006 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_000184_030 0.207031896 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_012940_020 0.2072832663 - - zeaxanthin epoxidase, putative [Ricinus communis]
12 Hb_010589_030 0.2095806011 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
13 Hb_006856_030 0.2096229089 - - Uridine kinase-like protein 4 [Glycine soja]
14 Hb_003687_160 0.209659661 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_000667_140 0.2108966402 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
16 Hb_000069_370 0.2114790696 - - -
17 Hb_000359_160 0.2136136492 - - PREDICTED: protein CAJ1 [Jatropha curcas]
18 Hb_000723_320 0.2140419375 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
19 Hb_000018_130 0.2151286486 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
20 Hb_011900_020 0.2169476742 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000367_140 Hb_000367_140 Hb_000699_080 Hb_000699_080 Hb_000367_140--Hb_000699_080 Hb_000360_010 Hb_000360_010 Hb_000367_140--Hb_000360_010 Hb_000359_070 Hb_000359_070 Hb_000367_140--Hb_000359_070 Hb_003336_020 Hb_003336_020 Hb_000367_140--Hb_003336_020 Hb_003905_030 Hb_003905_030 Hb_000367_140--Hb_003905_030 Hb_156850_020 Hb_156850_020 Hb_000367_140--Hb_156850_020 Hb_002686_060 Hb_002686_060 Hb_000699_080--Hb_002686_060 Hb_006925_030 Hb_006925_030 Hb_000699_080--Hb_006925_030 Hb_000699_080--Hb_003336_020 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_011900_020 Hb_011900_020 Hb_000360_010--Hb_011900_020 Hb_000360_010--Hb_156850_020 Hb_000360_010--Hb_003905_030 Hb_106552_030 Hb_106552_030 Hb_000360_010--Hb_106552_030 Hb_000360_010--Hb_000359_070 Hb_010080_070 Hb_010080_070 Hb_000360_010--Hb_010080_070 Hb_000359_070--Hb_011900_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_003336_020--Hb_012940_020 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000359_070 Hb_003336_020--Hb_002686_060 Hb_003336_020--Hb_156850_020 Hb_003905_030--Hb_010080_070 Hb_003905_030--Hb_156850_020 Hb_000103_240 Hb_000103_240 Hb_003905_030--Hb_000103_240 Hb_001257_110 Hb_001257_110 Hb_003905_030--Hb_001257_110 Hb_003905_030--Hb_011900_020 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_011900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0055859 0.0137837 0.0458834 0.0200982 0.010454 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253204 0.0199258 0 0.0157952 0.29825

CAGE analysis