Hb_000367_160

Information

Type -
Description -
Location Contig367: 147818-152027
Sequence    

Annotation

kegg
ID rcu:RCOM_1470520
description synaptosomal associated protein, putative
nr
ID XP_011013081.1
description PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
swissprot
ID Q9S7P9
description SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1
trembl
ID B9RLS5
description Synaptosomal associated protein, putative OS=Ricinus communis GN=RCOM_1470520 PE=4 SV=1
Gene Ontology
ID GO:0005515
description snap25 homologous protein snap33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37743: 147803-147913 , PASA_asmbl_37744: 149043-151923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_160 0.0 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
2 Hb_012286_030 0.0776259506 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
3 Hb_000155_200 0.0845124381 - - Rab7 [Hevea brasiliensis]
4 Hb_019280_050 0.0853529978 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
5 Hb_004410_080 0.0855290358 - - cellular nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000193_110 0.0856466392 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
7 Hb_000336_150 0.0870495614 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
8 Hb_004157_020 0.0871059303 - - PREDICTED: histone H2B-like [Gossypium raimondii]
9 Hb_001123_130 0.0873727829 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_004453_170 0.0883607972 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
11 Hb_004109_170 0.0888986292 - - PREDICTED: probable ribokinase [Jatropha curcas]
12 Hb_000001_060 0.0891463798 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
13 Hb_012565_070 0.0908982247 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000527_060 0.0913849667 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_000633_020 0.0914779457 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
16 Hb_010098_050 0.0918576634 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
17 Hb_000656_240 0.0928385664 - - proteasome subunit alpha type, putative [Ricinus communis]
18 Hb_010560_020 0.0929246799 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
19 Hb_001437_150 0.0933109901 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
20 Hb_000729_030 0.0941418425 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000367_160 Hb_000367_160 Hb_012286_030 Hb_012286_030 Hb_000367_160--Hb_012286_030 Hb_000155_200 Hb_000155_200 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_004410_080 Hb_004410_080 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_000155_200--Hb_004109_170 Hb_000120_960 Hb_000120_960 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570 Hb_010098_050 Hb_010098_050 Hb_019280_050--Hb_010098_050 Hb_001470_030 Hb_001470_030 Hb_019280_050--Hb_001470_030 Hb_000729_030 Hb_000729_030 Hb_019280_050--Hb_000729_030 Hb_000373_070 Hb_000373_070 Hb_019280_050--Hb_000373_070 Hb_003124_150 Hb_003124_150 Hb_019280_050--Hb_003124_150 Hb_008013_050 Hb_008013_050 Hb_019280_050--Hb_008013_050 Hb_000633_020 Hb_000633_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004157_020 Hb_004157_020 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_011519_010 Hb_011519_010 Hb_004410_080--Hb_011519_010 Hb_000622_180 Hb_000622_180 Hb_000193_110--Hb_000622_180 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_021068_040 Hb_021068_040 Hb_000193_110--Hb_021068_040 Hb_000336_150--Hb_000729_030 Hb_007304_120 Hb_007304_120 Hb_000336_150--Hb_007304_120 Hb_006615_240 Hb_006615_240 Hb_000336_150--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_000336_150--Hb_003582_060 Hb_000336_150--Hb_000205_090 Hb_000336_150--Hb_004109_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1631 41.1701 57.0619 30.7347 29.6397 32.0483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.1958 77.8288 51.1948 21.9439 23.2199

CAGE analysis