Hb_000367_200

Information

Type -
Description -
Location Contig367: 171381-174720
Sequence    

Annotation

kegg
ID vvi:104882301
description uncharacterized LOC104882301
nr
ID KDO54574.1
description hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EHB4
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0362003mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_200 0.0 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
2 Hb_003078_040 0.0725524482 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
3 Hb_005000_210 0.0770248459 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
4 Hb_002950_100 0.0939373512 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
5 Hb_002675_260 0.0973417166 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
6 Hb_000866_270 0.0986106397 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_000139_410 0.1007409226 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_001635_170 0.1031223535 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_000805_120 0.1046981788 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
10 Hb_000905_060 0.1073676898 - - protein with unknown function [Ricinus communis]
11 Hb_001404_100 0.1078208116 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
12 Hb_000302_270 0.108140044 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_002150_080 0.1089365221 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_023226_040 0.1092070995 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
15 Hb_006502_070 0.1093915678 - - separase, putative [Ricinus communis]
16 Hb_025645_010 0.1097317695 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
17 Hb_002085_110 0.1099976229 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
18 Hb_002685_010 0.1114459993 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
19 Hb_002233_150 0.1116662816 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
20 Hb_000031_060 0.1116826864 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000367_200 Hb_000367_200 Hb_003078_040 Hb_003078_040 Hb_000367_200--Hb_003078_040 Hb_005000_210 Hb_005000_210 Hb_000367_200--Hb_005000_210 Hb_002950_100 Hb_002950_100 Hb_000367_200--Hb_002950_100 Hb_002675_260 Hb_002675_260 Hb_000367_200--Hb_002675_260 Hb_000866_270 Hb_000866_270 Hb_000367_200--Hb_000866_270 Hb_000139_410 Hb_000139_410 Hb_000367_200--Hb_000139_410 Hb_028995_040 Hb_028995_040 Hb_003078_040--Hb_028995_040 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150 Hb_005000_210--Hb_000139_410 Hb_002188_130 Hb_002188_130 Hb_005000_210--Hb_002188_130 Hb_005000_210--Hb_000866_270 Hb_023226_040 Hb_023226_040 Hb_005000_210--Hb_023226_040 Hb_005000_210--Hb_003078_040 Hb_000521_320 Hb_000521_320 Hb_002950_100--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_002950_100--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_002950_100--Hb_000010_400 Hb_007813_040 Hb_007813_040 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040 Hb_000207_130 Hb_000207_130 Hb_002675_260--Hb_000207_130 Hb_005137_050 Hb_005137_050 Hb_002675_260--Hb_005137_050 Hb_002675_260--Hb_003687_230 Hb_002675_260--Hb_003078_040 Hb_007632_110 Hb_007632_110 Hb_002675_260--Hb_007632_110 Hb_000771_180 Hb_000771_180 Hb_002675_260--Hb_000771_180 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44279 0.642979 0.570295 0.427272 0.661657 0.573917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.995326 0.967325 0.607068 0.541999 0.144879

CAGE analysis