Hb_000367_210

Information

Type -
Description -
Location Contig367: 175085-176911
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013743mg
description hypothetical protein
nr
ID XP_012080340.1
description PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
swissprot
ID Q9D1Q4
description Dolichol-phosphate mannosyltransferase subunit 3 OS=Mus musculus GN=Dpm3 PE=3 SV=1
trembl
ID M5VL02
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013743mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description dolichol-phosphate mannosyltransferase subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37749: 176317-176837
cDNA
(Sanger)
(ID:Location)		 008_D16.ab1: 176317-176837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_210 0.0 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
2 Hb_187083_010 0.0675680082 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
3 Hb_000163_130 0.0751039508 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
4 Hb_001780_050 0.0754431 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
5 Hb_003561_030 0.0806948682 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
6 Hb_000820_130 0.0814740945 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
7 Hb_005914_200 0.0839604642 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
8 Hb_002316_120 0.0843032797 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
9 Hb_014834_030 0.0921440965 - - -
10 Hb_004754_070 0.0922047768 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_000300_390 0.0924311639 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_002843_210 0.095277875 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
13 Hb_012539_020 0.0954558117 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
14 Hb_004007_180 0.0980871484 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
15 Hb_000789_110 0.0988809725 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
16 Hb_011161_050 0.1009962932 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
17 Hb_006452_040 0.1043952582 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_000236_150 0.1075148753 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_000389_080 0.1079452483 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
20 Hb_005663_120 0.1091302331 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_210 Hb_000367_210 Hb_187083_010 Hb_187083_010 Hb_000367_210--Hb_187083_010 Hb_000163_130 Hb_000163_130 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_003561_030 Hb_003561_030 Hb_000367_210--Hb_003561_030 Hb_000820_130 Hb_000820_130 Hb_000367_210--Hb_000820_130 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_187083_010--Hb_003561_030 Hb_000236_460 Hb_000236_460 Hb_187083_010--Hb_000236_460 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_001780_050--Hb_005914_200 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_003561_030--Hb_011161_050 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000820_130--Hb_000163_130 Hb_005914_200--Hb_000236_150 Hb_005914_200--Hb_012539_020 Hb_005914_200--Hb_004754_070 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85366 0.504626 1.30654 4.34454 1.4927 4.78294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5613 15.9067 6.41729 2.82133 0.855179

CAGE analysis