Hb_000367_250

Information

Type -
Description -
Location Contig367: 196372-196905
Sequence    

Annotation

kegg
ID gmx:100797757
description myosin-2 heavy chain-like
nr
ID CBI22280.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_250 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001587_170 0.1397570175 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
3 Hb_003164_010 0.2227573301 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000120_630 0.2697335404 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_000856_270 0.2804406391 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
6 Hb_004007_140 0.2869577464 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
7 Hb_008279_030 0.2896001042 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012092_020 0.2923300764 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_000210_200 0.2951685731 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
10 Hb_000808_200 0.3054631382 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1-like [Jatropha curcas]
11 Hb_002701_230 0.3081447407 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]
12 Hb_003121_010 0.3107548167 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
13 Hb_002475_080 0.3118622403 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
14 Hb_000567_400 0.3125605001 - - cytochrome P450 family protein [Populus trichocarpa]
15 Hb_000106_110 0.3135684949 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
16 Hb_001140_190 0.3145744809 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
17 Hb_001266_150 0.3147452738 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
18 Hb_002662_040 0.3147477618 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
19 Hb_007336_050 0.3194268772 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
20 Hb_001504_210 0.3211087722 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_250 Hb_000367_250 Hb_001587_170 Hb_001587_170 Hb_000367_250--Hb_001587_170 Hb_003164_010 Hb_003164_010 Hb_000367_250--Hb_003164_010 Hb_000120_630 Hb_000120_630 Hb_000367_250--Hb_000120_630 Hb_000856_270 Hb_000856_270 Hb_000367_250--Hb_000856_270 Hb_004007_140 Hb_004007_140 Hb_000367_250--Hb_004007_140 Hb_008279_030 Hb_008279_030 Hb_000367_250--Hb_008279_030 Hb_001587_170--Hb_003164_010 Hb_001728_120 Hb_001728_120 Hb_001587_170--Hb_001728_120 Hb_001300_250 Hb_001300_250 Hb_001587_170--Hb_001300_250 Hb_001959_090 Hb_001959_090 Hb_001587_170--Hb_001959_090 Hb_000454_040 Hb_000454_040 Hb_001587_170--Hb_000454_040 Hb_003164_010--Hb_001728_120 Hb_003164_010--Hb_004007_140 Hb_002045_080 Hb_002045_080 Hb_003164_010--Hb_002045_080 Hb_003164_010--Hb_000856_270 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_145745_040 Hb_145745_040 Hb_000120_630--Hb_145745_040 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_002811_220 Hb_002811_220 Hb_000120_630--Hb_002811_220 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_000856_270--Hb_001140_190 Hb_000243_230 Hb_000243_230 Hb_000856_270--Hb_000243_230 Hb_000071_060 Hb_000071_060 Hb_000856_270--Hb_000071_060 Hb_000438_160 Hb_000438_160 Hb_000856_270--Hb_000438_160 Hb_000856_270--Hb_004007_140 Hb_001491_020 Hb_001491_020 Hb_000856_270--Hb_001491_020 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_004007_140--Hb_001817_040 Hb_004007_140--Hb_000438_160 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_004007_140--Hb_001491_020 Hb_003813_180 Hb_003813_180 Hb_008279_030--Hb_003813_180 Hb_011004_050 Hb_011004_050 Hb_008279_030--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_000011_410 Hb_000011_410 Hb_008279_030--Hb_000011_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.486129 0.180277 0 0.087753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.162746 0 0.179786

CAGE analysis