Hb_000367_260

Information

Type -
Description -
Location Contig367: 199639-201615
Sequence    

Annotation

kegg
ID rcu:RCOM_1470720
description ubiquitin-protein ligase, putative
nr
ID XP_012080331.1
description PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11681 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase keg-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37756: 199870-201509
cDNA
(Sanger)
(ID:Location)		 047_F10.ab1: 199870-201509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_260 0.0 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
2 Hb_001504_330 0.0880626974 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
3 Hb_000603_080 0.0907192127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
4 Hb_031910_020 0.0957005131 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
5 Hb_030565_030 0.0972150119 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
6 Hb_006824_050 0.0985737986 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
7 Hb_005188_020 0.0997241999 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
8 Hb_027393_030 0.1017245357 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
9 Hb_009803_050 0.1044847553 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
10 Hb_000007_140 0.1047452057 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
11 Hb_020805_130 0.1059247153 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_000748_130 0.1060864733 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
13 Hb_000549_040 0.1094420711 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
14 Hb_001959_190 0.1104723135 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_010344_050 0.111511109 - - Adagio 1 -like protein [Gossypium arboreum]
16 Hb_002027_040 0.1124454681 - - synapse-associated protein, putative [Ricinus communis]
17 Hb_001314_070 0.1126260577 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013607_040 0.1126493964 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
19 Hb_001544_030 0.1130487225 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
20 Hb_004993_060 0.1145101511 - - -

Gene co-expression network

sample Hb_000367_260 Hb_000367_260 Hb_001504_330 Hb_001504_330 Hb_000367_260--Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_000367_260--Hb_000603_080 Hb_031910_020 Hb_031910_020 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_001504_330--Hb_031910_020 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_004993_060 Hb_004993_060 Hb_031910_020--Hb_004993_060 Hb_031910_020--Hb_000603_080 Hb_031910_020--Hb_001314_070 Hb_000549_040 Hb_000549_040 Hb_031910_020--Hb_000549_040 Hb_031910_020--Hb_002799_040 Hb_030565_030--Hb_005188_020 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_020805_130 Hb_020805_130 Hb_030565_030--Hb_020805_130 Hb_000230_500 Hb_000230_500 Hb_030565_030--Hb_000230_500 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_030565_030--Hb_009803_050 Hb_000318_330 Hb_000318_330 Hb_006824_050--Hb_000318_330 Hb_006824_050--Hb_001959_190 Hb_002585_020 Hb_002585_020 Hb_006824_050--Hb_002585_020 Hb_002878_020 Hb_002878_020 Hb_006824_050--Hb_002878_020 Hb_006824_050--Hb_009803_050 Hb_005188_020--Hb_000230_500 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.49641 8.36037 4.71823 6.93215 1.9977 5.40779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15546 11.2548 20.4736 8.54687 8.48629

CAGE analysis