Hb_000367_320

Information

Type -
Description -
Location Contig367: 318788-320668
Sequence    

Annotation

kegg
ID rcu:RCOM_1470980
description hypothetical protein
nr
ID XP_002514710.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O48724
description Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1
trembl
ID B9RLU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37767: 319167-320095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003126_120 0.1214625013 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
3 Hb_005736_110 0.128315444 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
4 Hb_034688_030 0.1288701272 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
5 Hb_002000_100 0.1305820798 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
6 Hb_022693_090 0.1312321527 - - glycosyltransferase, putative [Ricinus communis]
7 Hb_001360_020 0.1379081339 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
8 Hb_002007_330 0.13831204 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
9 Hb_006618_100 0.1411520303 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
10 Hb_000028_550 0.1424141282 - - unknown [Medicago truncatula]
11 Hb_011314_010 0.1425879306 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
12 Hb_007403_100 0.144163964 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
13 Hb_009225_070 0.1446593332 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_000349_280 0.1469231355 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002768_040 0.1471609331 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000087_190 0.1475918993 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
17 Hb_022597_010 0.1476758681 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
18 Hb_000453_290 0.1484424144 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
19 Hb_003582_030 0.1484456935 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
20 Hb_186495_010 0.153324928 - - Phosphoprotein phosphatase [Theobroma cacao]

Gene co-expression network

sample Hb_000367_320 Hb_000367_320 Hb_003126_120 Hb_003126_120 Hb_000367_320--Hb_003126_120 Hb_005736_110 Hb_005736_110 Hb_000367_320--Hb_005736_110 Hb_034688_030 Hb_034688_030 Hb_000367_320--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_000367_320--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_000367_320--Hb_022693_090 Hb_001360_020 Hb_001360_020 Hb_000367_320--Hb_001360_020 Hb_003126_120--Hb_034688_030 Hb_003126_120--Hb_002000_100 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_003126_120--Hb_001360_020 Hb_002835_120 Hb_002835_120 Hb_005736_110--Hb_002835_120 Hb_006618_100 Hb_006618_100 Hb_005736_110--Hb_006618_100 Hb_145975_010 Hb_145975_010 Hb_005736_110--Hb_145975_010 Hb_011344_050 Hb_011344_050 Hb_005736_110--Hb_011344_050 Hb_103632_010 Hb_103632_010 Hb_005736_110--Hb_103632_010 Hb_002627_010 Hb_002627_010 Hb_034688_030--Hb_002627_010 Hb_001775_060 Hb_001775_060 Hb_034688_030--Hb_001775_060 Hb_002592_070 Hb_002592_070 Hb_034688_030--Hb_002592_070 Hb_034688_030--Hb_002000_100 Hb_000453_290 Hb_000453_290 Hb_034688_030--Hb_000453_290 Hb_002007_330 Hb_002007_330 Hb_002000_100--Hb_002007_330 Hb_142056_010 Hb_142056_010 Hb_002000_100--Hb_142056_010 Hb_002000_100--Hb_001360_020 Hb_007403_100 Hb_007403_100 Hb_002000_100--Hb_007403_100 Hb_008731_010 Hb_008731_010 Hb_002000_100--Hb_008731_010 Hb_002384_030 Hb_002384_030 Hb_002000_100--Hb_002384_030 Hb_022693_090--Hb_000453_290 Hb_022693_090--Hb_002384_030 Hb_009225_070 Hb_009225_070 Hb_022693_090--Hb_009225_070 Hb_022693_090--Hb_001360_020 Hb_022693_090--Hb_011314_010 Hb_022693_090--Hb_002592_070 Hb_001360_020--Hb_002384_030 Hb_001360_020--Hb_142056_010 Hb_001360_020--Hb_002007_330 Hb_001360_020--Hb_000453_290 Hb_001360_020--Hb_008731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112865 0.686981 0.164301 3.27456 0.0444811 0.0319117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0605969 0 0.345959 0.595454

CAGE analysis