Hb_000368_030

Information

Type -
Description -
Location Contig368: 16331-20435
Sequence    

Annotation

kegg
ID rcu:RCOM_1595810
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_012071942.1
description PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
swissprot
ID Q67YU0
description Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1
trembl
ID A0A067L395
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04489 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37809: 18659-19857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_030 0.0 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
2 Hb_000270_180 0.1395596295 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
3 Hb_005181_160 0.1428196369 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
4 Hb_001221_330 0.1711705314 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
5 Hb_001946_220 0.1733826471 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
6 Hb_007919_020 0.1733851347 - - electron transporter, putative [Ricinus communis]
7 Hb_002249_070 0.1769289215 - - gcn4-complementing protein, putative [Ricinus communis]
8 Hb_083940_010 0.1800306646 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_000189_170 0.1821840412 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_000057_140 0.1836758822 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
11 Hb_000320_300 0.1882093001 - - prephenate dehydratase, putative [Ricinus communis]
12 Hb_009571_010 0.1895094174 - - early-responsive to dehydration family protein [Populus trichocarpa]
13 Hb_000220_030 0.1901381007 - - PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Jatropha curcas]
14 Hb_066720_010 0.1919352353 - - PREDICTED: histone H2B [Jatropha curcas]
15 Hb_189216_030 0.1919964063 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
16 Hb_001114_080 0.1939803884 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
17 Hb_000796_010 0.1949773005 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
18 Hb_000923_060 0.1971773971 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
19 Hb_004005_020 0.1981764522 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_002027_390 0.2046279149 - - shikimate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000368_030 Hb_000368_030 Hb_000270_180 Hb_000270_180 Hb_000368_030--Hb_000270_180 Hb_005181_160 Hb_005181_160 Hb_000368_030--Hb_005181_160 Hb_001221_330 Hb_001221_330 Hb_000368_030--Hb_001221_330 Hb_001946_220 Hb_001946_220 Hb_000368_030--Hb_001946_220 Hb_007919_020 Hb_007919_020 Hb_000368_030--Hb_007919_020 Hb_002249_070 Hb_002249_070 Hb_000368_030--Hb_002249_070 Hb_000648_050 Hb_000648_050 Hb_000270_180--Hb_000648_050 Hb_000270_180--Hb_002249_070 Hb_000220_030 Hb_000220_030 Hb_000270_180--Hb_000220_030 Hb_000684_520 Hb_000684_520 Hb_000270_180--Hb_000684_520 Hb_029385_010 Hb_029385_010 Hb_000270_180--Hb_029385_010 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_005181_160--Hb_002249_070 Hb_083940_010 Hb_083940_010 Hb_001221_330--Hb_083940_010 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_000189_170 Hb_000189_170 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_000120_720 Hb_000120_720 Hb_001946_220--Hb_000120_720 Hb_000742_010 Hb_000742_010 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_000320_300 Hb_000320_300 Hb_001946_220--Hb_000320_300 Hb_001946_220--Hb_007919_020 Hb_001205_080 Hb_001205_080 Hb_001946_220--Hb_001205_080 Hb_007919_020--Hb_000270_180 Hb_007919_020--Hb_001205_080 Hb_007919_020--Hb_000742_010 Hb_007919_020--Hb_000648_050 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19196 0.487721 1.89871 0.907693 0.0906598 0.11181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26749 0.773772 1.24002 1.34045 0.218218

CAGE analysis