Hb_000368_050

Information

Type -
Description -
Location Contig368: 72899-79203
Sequence    

Annotation

kegg
ID rcu:RCOM_1595960
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002510455.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCV9
description Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1
trembl
ID B9R812
description Beta-galactosidase OS=Ricinus communis GN=RCOM_1595960 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37811: 72881-79153 , PASA_asmbl_37812: 75499-78239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_050 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_182869_010 0.0586609341 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_000676_230 0.0713806841 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
4 Hb_001534_140 0.0726012536 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
5 Hb_047612_010 0.0774504692 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
6 Hb_009252_070 0.0782156039 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
7 Hb_010142_060 0.0814404685 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_005711_030 0.0852830332 - - hypothetical protein RCOM_0460020 [Ricinus communis]
9 Hb_001511_220 0.0857657662 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
10 Hb_001195_710 0.0884562259 - - glycosyltransferase family GT8 protein [Populus deltoides]
11 Hb_000813_070 0.093428331 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004650_120 0.0942001252 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
13 Hb_003058_240 0.0957415787 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
14 Hb_000620_050 0.0972893717 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
15 Hb_000103_440 0.0980052713 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
16 Hb_000364_090 0.0990833508 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
17 Hb_001289_070 0.1007478862 - - PREDICTED: protein YLS9-like [Jatropha curcas]
18 Hb_012395_060 0.1017597207 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
19 Hb_138585_010 0.1024493076 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
20 Hb_133974_010 0.1027740416 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000368_050 Hb_000368_050 Hb_182869_010 Hb_182869_010 Hb_000368_050--Hb_182869_010 Hb_000676_230 Hb_000676_230 Hb_000368_050--Hb_000676_230 Hb_001534_140 Hb_001534_140 Hb_000368_050--Hb_001534_140 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_010142_060 Hb_010142_060 Hb_000368_050--Hb_010142_060 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_002925_060 Hb_002925_060 Hb_182869_010--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_182869_010--Hb_000620_050 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_003058_240 Hb_003058_240 Hb_182869_010--Hb_003058_240 Hb_004032_290 Hb_004032_290 Hb_000676_230--Hb_004032_290 Hb_000676_230--Hb_010142_060 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_000364_090 Hb_000364_090 Hb_000676_230--Hb_000364_090 Hb_001534_140--Hb_010142_060 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_138585_010 Hb_138585_010 Hb_001534_140--Hb_138585_010 Hb_169077_030 Hb_169077_030 Hb_001534_140--Hb_169077_030 Hb_012395_060 Hb_012395_060 Hb_001534_140--Hb_012395_060 Hb_047612_010--Hb_009252_070 Hb_047612_010--Hb_002925_060 Hb_047612_010--Hb_001534_140 Hb_047612_010--Hb_182869_010 Hb_047612_010--Hb_012395_060 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.07651 5.46272 18.9578 105.358 0.0405779 0.18713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0109434 0 6.99952 59.0911

CAGE analysis