Hb_000368_060

Information

Type -
Description -
Location Contig368: 79689-81744
Sequence    

Annotation

kegg
ID rcu:RCOM_1595970
description Thioredoxin H-type, putative
nr
ID AEC03321.1
description thioredoxin H-type 6 [Hevea brasiliensis]
swissprot
ID Q43636
description Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
trembl
ID I1SSJ2
description Thioredoxin H-type 6 OS=Hevea brasiliensis GN=TrxH6 PE=2 SV=1
Gene Ontology
ID GO:0005829
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37814: 79689-81816
cDNA
(Sanger)
(ID:Location)		 003_D01.ab1: 80045-81786 , 003_E02.ab1: 79994-81786 , 004_P23.ab1: 79990-81786 , 007_G16.ab1: 79935-81798 , 008_P03.ab1: 79905-81785 , 012_F12.ab1: 79889-81825 , 021_N21.ab1: 79888-81825 , 025_C23.ab1: 80018-81786 , 025_K07.ab1: 79995-81783 , 026_J09.ab1: 79990-81786 , 027_A21.ab1: 79990-81786 , 030_C18.ab1: 79939-81798 , 033_M03.ab1: 80032-81786 , 034_C21.ab1: 80045-81786 , 041_E08.ab1: 80012-81783 , 041_G03.ab1: 80081-81794 , 043_O15.ab1: 80010-81798 , 044_J03.ab1: 79888-81794 , 046_D23.ab1: 80005-81794 , 047_H06.ab1: 79907-81780 , 052_N10.ab1: 80010-81786

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_060 0.0 - - thioredoxin H-type 6 [Hevea brasiliensis]
2 Hb_000562_040 0.0948936297 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
3 Hb_005539_240 0.0965083414 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
4 Hb_000784_030 0.1242048791 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
5 Hb_000103_110 0.1285854353 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
6 Hb_003581_260 0.1312637233 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
7 Hb_011360_080 0.1326260639 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_004324_050 0.1336077186 - - PREDICTED: spermine synthase [Jatropha curcas]
9 Hb_000432_050 0.1349973847 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
10 Hb_002290_040 0.1391643602 - - conserved hypothetical protein [Ricinus communis]
11 Hb_024714_060 0.1398160262 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
12 Hb_000141_030 0.1423201665 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
13 Hb_000723_190 0.1459954034 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_001762_060 0.1475420389 - - pantothenate kinase, putative [Ricinus communis]
15 Hb_001232_130 0.1501585534 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
16 Hb_000061_300 0.1502070008 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
17 Hb_012573_030 0.1529619969 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007594_120 0.1560084719 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
19 Hb_000963_140 0.1565158841 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_005839_110 0.1570993212 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]

Gene co-expression network

sample Hb_000368_060 Hb_000368_060 Hb_000562_040 Hb_000562_040 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000103_110 Hb_000103_110 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_011360_080 Hb_011360_080 Hb_000368_060--Hb_011360_080 Hb_000562_040--Hb_000784_030 Hb_000562_040--Hb_003581_260 Hb_001135_210 Hb_001135_210 Hb_000562_040--Hb_001135_210 Hb_024714_060 Hb_024714_060 Hb_000562_040--Hb_024714_060 Hb_005614_050 Hb_005614_050 Hb_000562_040--Hb_005614_050 Hb_001232_130 Hb_001232_130 Hb_005539_240--Hb_001232_130 Hb_008931_010 Hb_008931_010 Hb_005539_240--Hb_008931_010 Hb_000061_300 Hb_000061_300 Hb_005539_240--Hb_000061_300 Hb_001575_020 Hb_001575_020 Hb_005539_240--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_005539_240--Hb_001616_060 Hb_000784_030--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000784_030--Hb_000836_130 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_000784_030--Hb_003581_260 Hb_004324_050 Hb_004324_050 Hb_000103_110--Hb_004324_050 Hb_000103_110--Hb_000562_040 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_003581_260--Hb_001135_210 Hb_000477_080 Hb_000477_080 Hb_011360_080--Hb_000477_080 Hb_004429_070 Hb_004429_070 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_011360_080--Hb_000141_030 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
554.66 53.0774 176.758 146.929 446.479 285.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1447.9 1439.18 2967.07 310.859 259.916

CAGE analysis