Hb_000368_090

Information

Type -
Description -
Location Contig368: 143605-144543
Sequence    

Annotation

kegg
ID zma:103648602
description uncharacterized LOC103648602
nr
ID DAA37529.1
description TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
swissprot
ID Q8HXH0
description LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1
trembl
ID A0A096TPF5
description Uncharacterized protein OS=Zea mays PE=4 SV=1
Gene Ontology
ID GO:0004176
description lon peptidase n-terminal domain and ring finger protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37818: 143832-161039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_090 0.0 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
2 Hb_174865_040 0.1003956756 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
3 Hb_012573_050 0.1027294676 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
4 Hb_001277_100 0.1052426011 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
5 Hb_000327_110 0.1058933291 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
6 Hb_000941_100 0.1072526645 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
7 Hb_156850_100 0.1101881049 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
8 Hb_000331_490 0.1121402036 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
9 Hb_000388_150 0.1143457946 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
10 Hb_048093_010 0.1148439745 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
11 Hb_000261_050 0.1152987806 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
12 Hb_009767_130 0.1176918462 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
13 Hb_007975_060 0.1178071896 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
14 Hb_002232_390 0.1179831102 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
15 Hb_001226_140 0.1188475931 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
16 Hb_001504_030 0.1193637264 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
17 Hb_009020_040 0.1199833612 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
18 Hb_001314_080 0.1200481543 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
19 Hb_000244_180 0.1201799759 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000107_430 0.1210066654 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000368_090 Hb_000368_090 Hb_174865_040 Hb_174865_040 Hb_000368_090--Hb_174865_040 Hb_012573_050 Hb_012573_050 Hb_000368_090--Hb_012573_050 Hb_001277_100 Hb_001277_100 Hb_000368_090--Hb_001277_100 Hb_000327_110 Hb_000327_110 Hb_000368_090--Hb_000327_110 Hb_000941_100 Hb_000941_100 Hb_000368_090--Hb_000941_100 Hb_156850_100 Hb_156850_100 Hb_000368_090--Hb_156850_100 Hb_174865_040--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_000388_150 Hb_000388_150 Hb_174865_040--Hb_000388_150 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_000107_430 Hb_000107_430 Hb_001277_100--Hb_000107_430 Hb_000811_070 Hb_000811_070 Hb_001277_100--Hb_000811_070 Hb_006907_060 Hb_006907_060 Hb_001277_100--Hb_006907_060 Hb_007192_030 Hb_007192_030 Hb_001277_100--Hb_007192_030 Hb_011671_260 Hb_011671_260 Hb_001277_100--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001277_100--Hb_000086_080 Hb_009767_130 Hb_009767_130 Hb_000327_110--Hb_009767_130 Hb_000327_110--Hb_174865_040 Hb_000172_440 Hb_000172_440 Hb_000327_110--Hb_000172_440 Hb_001449_070 Hb_001449_070 Hb_000327_110--Hb_001449_070 Hb_015934_120 Hb_015934_120 Hb_000327_110--Hb_015934_120 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_156850_100--Hb_160271_010 Hb_156850_100--Hb_048093_010 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.08425 9.41828 21.5548 24.2322 10.5233 10.5042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2148 11.5565 15.9228 4.27905 38.6541

CAGE analysis