Hb_000369_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig369: 85119-86182
Sequence    

Annotation

kegg
ID pmum:103331294
description zinc finger CCCH domain-containing protein 48-like
nr
ID XP_012067070.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067LC60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01868 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37988: 85145-85449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_006091_030 0.0855744972 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
3 Hb_011639_050 0.0871037277 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004440_100 0.0909536004 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
5 Hb_002400_270 0.0939569306 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
6 Hb_002874_070 0.0947907017 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
7 Hb_001846_060 0.1065651676 - - hypothetical protein RCOM_0992860 [Ricinus communis]
8 Hb_000497_140 0.1072698255 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_001936_050 0.1076466563 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
10 Hb_000490_030 0.1084157631 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
11 Hb_002818_040 0.1158565861 - - tRNA synthetase-related family protein [Populus trichocarpa]
12 Hb_000491_080 0.1170473078 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
13 Hb_000088_010 0.1174548304 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_029281_010 0.1176400951 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
15 Hb_001040_170 0.1193604437 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_007786_010 0.119814852 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
17 Hb_002631_050 0.1202665499 - - membrane associated ring finger 1,8, putative [Ricinus communis]
18 Hb_002740_130 0.1208044724 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
19 Hb_011496_010 0.1210059887 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
20 Hb_001584_110 0.1214233994 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000369_060 Hb_000369_060 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_011639_050 Hb_011639_050 Hb_000369_060--Hb_011639_050 Hb_004440_100 Hb_004440_100 Hb_000369_060--Hb_004440_100 Hb_002400_270 Hb_002400_270 Hb_000369_060--Hb_002400_270 Hb_002874_070 Hb_002874_070 Hb_000369_060--Hb_002874_070 Hb_001846_060 Hb_001846_060 Hb_000369_060--Hb_001846_060 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_011639_050--Hb_002874_070 Hb_000497_140 Hb_000497_140 Hb_011639_050--Hb_000497_140 Hb_011639_050--Hb_004440_100 Hb_001946_280 Hb_001946_280 Hb_011639_050--Hb_001946_280 Hb_185467_010 Hb_185467_010 Hb_011639_050--Hb_185467_010 Hb_004440_100--Hb_002874_070 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_022256_040 Hb_022256_040 Hb_004440_100--Hb_022256_040 Hb_004440_100--Hb_006091_030 Hb_001584_110 Hb_001584_110 Hb_004440_100--Hb_001584_110 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_002874_070--Hb_001584_110 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_001846_060--Hb_000742_250 Hb_001846_060--Hb_002400_270 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_007786_010 Hb_007786_010 Hb_001846_060--Hb_007786_010 Hb_001846_060--Hb_011316_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84707 1.63544 0.966611 0.764414 8.36587 7.72433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93994 2.00721 7.40665 2.39724 1.56996

CAGE analysis