Hb_000369_110

Information

Type -
Description -
Location Contig369: 161836-166549
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38001: 163474-166944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_110 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_007537_040 0.0545804261 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
3 Hb_003025_160 0.0654312156 - - Protein HVA22, putative [Ricinus communis]
4 Hb_002121_050 0.0670531444 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
5 Hb_008225_050 0.0682658442 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
6 Hb_002752_020 0.0717895212 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
7 Hb_000254_130 0.0732495308 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_156093_010 0.0748296474 - - hypothetical protein RCOM_0504250 [Ricinus communis]
9 Hb_001735_040 0.076326322 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
10 Hb_008195_070 0.0779686091 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_004970_060 0.0783742587 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
12 Hb_000497_050 0.0797953697 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
13 Hb_010326_020 0.082608955 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
14 Hb_004032_400 0.0845923467 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
15 Hb_000049_100 0.0870359846 - - Photosystem II reaction center W protein, putative [Ricinus communis]
16 Hb_011724_040 0.0887738209 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
17 Hb_001975_100 0.08922886 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
18 Hb_001999_230 0.0895277434 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
19 Hb_146255_030 0.0898914805 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
20 Hb_003632_020 0.0900767545 - - calcium-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000369_110 Hb_000369_110 Hb_007537_040 Hb_007537_040 Hb_000369_110--Hb_007537_040 Hb_003025_160 Hb_003025_160 Hb_000369_110--Hb_003025_160 Hb_002121_050 Hb_002121_050 Hb_000369_110--Hb_002121_050 Hb_008225_050 Hb_008225_050 Hb_000369_110--Hb_008225_050 Hb_002752_020 Hb_002752_020 Hb_000369_110--Hb_002752_020 Hb_000254_130 Hb_000254_130 Hb_000369_110--Hb_000254_130 Hb_007537_040--Hb_008225_050 Hb_007537_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_007537_040--Hb_004970_060 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020 Hb_003025_160--Hb_008225_050 Hb_003025_160--Hb_000254_130 Hb_003025_160--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_001999_230 Hb_001999_230 Hb_003025_160--Hb_001999_230 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_006132_080 Hb_006132_080 Hb_002121_050--Hb_006132_080 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_002121_050--Hb_008225_050 Hb_002121_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_002752_020--Hb_000497_050 Hb_146255_030 Hb_146255_030 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_001277_350 Hb_001277_350 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_001999_230 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.131671 3.35569 1.98243 0.0435788 0.020447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102439 5.21136

CAGE analysis