Hb_000369_130

Information

Type -
Description -
Location Contig369: 184923-186491
Sequence    

Annotation

kegg
ID vvi:100258019
description H/ACA ribonucleoprotein complex subunit 4
nr
ID XP_012078828.1
description PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
swissprot
ID O43102
description Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cbf5 PE=2 SV=1
trembl
ID A0A067KKT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13359 PE=4 SV=1
Gene Ontology
ID GO:0005829
description h aca ribonucleoprotein complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38002: 181015-183992 , PASA_asmbl_38003: 185790-186200 , PASA_asmbl_38004: 186225-186680
cDNA
(Sanger)
(ID:Location)		 040_A02.ab1: 181015-183965 , 047_O15.ab1: 181015-183965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_130 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
2 Hb_002107_070 0.0557687079 - - hypothetical protein RCOM_1598630 [Ricinus communis]
3 Hb_003058_060 0.0579871173 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
4 Hb_006355_090 0.0597570373 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
5 Hb_001821_090 0.0699625648 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
6 Hb_005143_030 0.0718508934 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
7 Hb_001621_130 0.0763935883 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
8 Hb_001034_070 0.0769515539 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_104061_020 0.0774026901 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
10 Hb_000307_210 0.0785989035 - - Transportin 1 isoform 1 [Theobroma cacao]
11 Hb_000856_310 0.0793029183 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_002329_040 0.0800744893 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_001454_280 0.0805521558 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
14 Hb_002170_050 0.0810489003 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
15 Hb_009615_170 0.081652218 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
16 Hb_001178_070 0.0823986901 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
17 Hb_017358_040 0.0824349313 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
18 Hb_010053_030 0.0832414732 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
19 Hb_000213_120 0.0838260413 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_009175_020 0.0839411032 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000369_130 Hb_000369_130 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_003058_060--Hb_001821_090 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_003058_060--Hb_104061_020 Hb_140049_080 Hb_140049_080 Hb_006355_090--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_006355_090--Hb_061878_010 Hb_001318_020 Hb_001318_020 Hb_006355_090--Hb_001318_020 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_028487_010 Hb_001821_090--Hb_000579_230 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_005143_030--Hb_028487_010 Hb_005143_030--Hb_002107_070 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_010053_030 Hb_010053_030 Hb_001621_130--Hb_010053_030 Hb_006478_060 Hb_006478_060 Hb_001621_130--Hb_006478_060 Hb_000343_030 Hb_000343_030 Hb_001621_130--Hb_000343_030 Hb_000923_080 Hb_000923_080 Hb_001621_130--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_001621_130--Hb_000505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3417 17.1915 6.72993 11.5063 15.2197 19.3939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44425 9.1001 8.87036 20.1431 8.36268

CAGE analysis