Hb_000370_010

Information

Type -
Description -
Location Contig370: 7284-8338
Sequence    

Annotation

kegg
ID rcu:RCOM_0812810
description hypothetical protein
nr
ID XP_012087502.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000370_010 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_010626_020 0.0927551912 - - -
3 Hb_030630_010 0.1051298005 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
4 Hb_000204_200 0.1098002174 - - hypothetical protein VITISV_019818 [Vitis vinifera]
5 Hb_009474_010 0.1344816295 - - -
6 Hb_007768_030 0.1439097836 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000661_190 0.201667052 - - PREDICTED: protein spt2-like [Jatropha curcas]
8 Hb_000544_140 0.2120992973 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
9 Hb_003177_120 0.2360581875 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
10 Hb_000211_060 0.2560615413 - - glutathione peroxidase [Populus euphratica]
11 Hb_123521_010 0.2577833114 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_003446_040 0.3214899031 - - -
13 Hb_001650_010 0.3309510601 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_021156_030 0.3377094009 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
15 Hb_008147_010 0.3395425529 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_001021_060 0.3536043421 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_062482_010 0.3548752149 - - -
18 Hb_000453_220 0.3645800774 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
19 Hb_004413_030 0.374582683 - - Retrotransposon protein, putative [Theobroma cacao]
20 Hb_172112_010 0.3791753004 - - hypothetical protein JCGZ_26322 [Jatropha curcas]

Gene co-expression network

sample Hb_000370_010 Hb_000370_010 Hb_010626_020 Hb_010626_020 Hb_000370_010--Hb_010626_020 Hb_030630_010 Hb_030630_010 Hb_000370_010--Hb_030630_010 Hb_000204_200 Hb_000204_200 Hb_000370_010--Hb_000204_200 Hb_009474_010 Hb_009474_010 Hb_000370_010--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_000370_010--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_000370_010--Hb_000661_190 Hb_000544_140 Hb_000544_140 Hb_010626_020--Hb_000544_140 Hb_010626_020--Hb_030630_010 Hb_010626_020--Hb_000204_200 Hb_123521_010 Hb_123521_010 Hb_010626_020--Hb_123521_010 Hb_010626_020--Hb_009474_010 Hb_030630_010--Hb_000204_200 Hb_030630_010--Hb_009474_010 Hb_030630_010--Hb_007768_030 Hb_030630_010--Hb_000661_190 Hb_000211_060 Hb_000211_060 Hb_030630_010--Hb_000211_060 Hb_000204_200--Hb_009474_010 Hb_000204_200--Hb_007768_030 Hb_000204_200--Hb_000661_190 Hb_000204_200--Hb_000211_060 Hb_009474_010--Hb_007768_030 Hb_009474_010--Hb_000661_190 Hb_009474_010--Hb_000211_060 Hb_007768_030--Hb_000661_190 Hb_007768_030--Hb_000211_060 Hb_000661_190--Hb_000211_060 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0688331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.124623 0 0

CAGE analysis