Hb_000370_020

Information

Type -
Description -
Location Contig370: 35976-45126
Sequence    

Annotation

kegg
ID rcu:RCOM_1604360
description hypothetical protein
nr
ID XP_002526587.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKR8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1604360 PE=4 SV=1
Gene Ontology
ID GO:0005796
description pmr5 cas1p gdsl sgnh-like acyl-esterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38025: 36086-36567 , PASA_asmbl_38026: 36746-44884 , PASA_asmbl_38027: 43876-44857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000370_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000359_310 0.0823331463 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
3 Hb_005023_010 0.0929287682 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
4 Hb_012395_170 0.0942995916 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000256_150 0.0956043401 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
6 Hb_027380_220 0.0963655965 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
7 Hb_002495_080 0.0979540394 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
8 Hb_090051_030 0.1007921648 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_005291_050 0.1013297167 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
10 Hb_006618_120 0.1017902907 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
11 Hb_005276_060 0.1025463906 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
12 Hb_001018_110 0.1034870016 - - unnamed protein product [Coffea canephora]
13 Hb_002289_060 0.104153349 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000300_630 0.1045276587 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
15 Hb_001640_030 0.1045650777 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_000062_540 0.1045896599 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001163_100 0.1046471374 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_084247_010 0.1049762445 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011486_040 0.1059133462 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
20 Hb_003994_280 0.1059699776 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]

Gene co-expression network

sample Hb_000370_020 Hb_000370_020 Hb_000359_310 Hb_000359_310 Hb_000370_020--Hb_000359_310 Hb_005023_010 Hb_005023_010 Hb_000370_020--Hb_005023_010 Hb_012395_170 Hb_012395_170 Hb_000370_020--Hb_012395_170 Hb_000256_150 Hb_000256_150 Hb_000370_020--Hb_000256_150 Hb_027380_220 Hb_027380_220 Hb_000370_020--Hb_027380_220 Hb_002495_080 Hb_002495_080 Hb_000370_020--Hb_002495_080 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_009661_030 Hb_009661_030 Hb_000359_310--Hb_009661_030 Hb_001946_180 Hb_001946_180 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000359_310--Hb_000256_150 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_001018_130 Hb_001018_130 Hb_005023_010--Hb_001018_130 Hb_000300_630 Hb_000300_630 Hb_005023_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_005023_010--Hb_001018_110 Hb_001633_130 Hb_001633_130 Hb_005023_010--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_005023_010--Hb_000146_050 Hb_005276_060 Hb_005276_060 Hb_012395_170--Hb_005276_060 Hb_084247_010 Hb_084247_010 Hb_012395_170--Hb_084247_010 Hb_003617_020 Hb_003617_020 Hb_012395_170--Hb_003617_020 Hb_003929_170 Hb_003929_170 Hb_012395_170--Hb_003929_170 Hb_001124_010 Hb_001124_010 Hb_012395_170--Hb_001124_010 Hb_000390_250 Hb_000390_250 Hb_012395_170--Hb_000390_250 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_000260_010 Hb_000260_010 Hb_027380_220--Hb_000260_010 Hb_001936_130 Hb_001936_130 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110 Hb_005650_010 Hb_005650_010 Hb_002495_080--Hb_005650_010 Hb_006658_020 Hb_006658_020 Hb_002495_080--Hb_006658_020 Hb_000340_230 Hb_000340_230 Hb_002495_080--Hb_000340_230 Hb_000441_090 Hb_000441_090 Hb_002495_080--Hb_000441_090 Hb_000258_070 Hb_000258_070 Hb_002495_080--Hb_000258_070 Hb_002495_080--Hb_000049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.687 10.3222 11.3514 29.9029 14.4218 16.0534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.69858 15.7719 17.7028 7.61655 21.2804

CAGE analysis