Hb_000371_060

Information

Type transcription factor
Description TF Family: BES1
Location Contig371: 117269-119689
Sequence    

Annotation

kegg
ID rcu:RCOM_0553190
description BRASSINAZOLE-RESISTANT 1 protein, putative
nr
ID XP_002525100.1
description BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
swissprot
ID Q94A43
description BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1
trembl
ID B9SGI1
description BRASSINAZOLE-RESISTANT 1 protein, putative OS=Ricinus communis GN=RCOM_0553190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38040: 117234-119601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_060 0.0 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
2 Hb_001414_040 0.08124374 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
3 Hb_002524_020 0.0867383668 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
4 Hb_001259_120 0.0920023102 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
5 Hb_001195_350 0.0921254894 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
6 Hb_001257_100 0.0932932692 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
7 Hb_000059_130 0.0962531007 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
8 Hb_000676_040 0.0966046629 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
9 Hb_000216_020 0.1031332829 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
10 Hb_000270_230 0.1032453839 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
11 Hb_000069_780 0.1036586427 - - atpob1, putative [Ricinus communis]
12 Hb_007576_200 0.1051752999 - - amino acid transporter, putative [Ricinus communis]
13 Hb_004162_120 0.1096214802 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
14 Hb_007765_030 0.1113092702 - - PREDICTED: neutral ceramidase [Jatropha curcas]
15 Hb_062416_010 0.1125464889 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
16 Hb_000270_110 0.1133712959 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
17 Hb_000059_020 0.1134070918 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
18 Hb_002122_080 0.1148470964 - - -
19 Hb_001675_010 0.1149431099 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
20 Hb_002812_010 0.1154489874 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000371_060 Hb_000371_060 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_002524_020 Hb_002524_020 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001414_040--Hb_001259_120 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_002524_020--Hb_007765_030 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_004631_110 Hb_004631_110 Hb_001195_350--Hb_004631_110 Hb_000840_070 Hb_000840_070 Hb_001195_350--Hb_000840_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_001195_350--Hb_002524_020 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8309 77.1071 29.7411 44.8622 16.5545 16.0338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.386 8.47883 11.0016 44.9997 19.0517

CAGE analysis