Hb_000371_080

Information

Type -
Description -
Location Contig371: 138580-141421
Sequence    

Annotation

kegg
ID rcu:RCOM_0553170
description ubiquitin-conjugating enzyme m, putative (EC:6.3.2.19)
nr
ID XP_002525098.1
description ubiquitin-conjugating enzyme m, putative [Ricinus communis]
swissprot
ID Q9SDY5
description NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1
trembl
ID B9SGH9
description Ubiquitin-conjugating enzyme m, putative OS=Ricinus communis GN=RCOM_0553170 PE=3 SV=1
Gene Ontology
ID GO:0016874
description nedd8-conjugating enzyme ubc12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38041: 138603-141543
cDNA
(Sanger)
(ID:Location)		 002_N03.ab1: 138714-141472 , 009_G10.ab1: 138762-141496 , 031_K07.ab1: 138798-141543 , 033_F14.ab1: 138794-141496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_080 0.0 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
2 Hb_005686_110 0.0423546176 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
3 Hb_009711_030 0.0535414033 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
4 Hb_022250_040 0.0542415262 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_003020_230 0.0608136139 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
6 Hb_001824_070 0.061382666 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
7 Hb_005997_010 0.0650686703 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
8 Hb_002078_450 0.0651273908 - - nuclear transport factor, putative [Ricinus communis]
9 Hb_002097_110 0.0660319659 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_003540_040 0.0664481472 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
11 Hb_000465_060 0.0676820166 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
12 Hb_004662_030 0.068444918 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
13 Hb_023732_070 0.0713567614 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
14 Hb_001584_070 0.0724337589 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021650_030 0.0738077978 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_004595_020 0.0749806134 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
17 Hb_000720_120 0.0751317183 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
18 Hb_125000_010 0.0751785577 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
19 Hb_012515_010 0.0755092422 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
20 Hb_009954_040 0.075833738 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000371_080 Hb_000371_080 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_009711_030 Hb_009711_030 Hb_000371_080--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_001824_070 Hb_001824_070 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_005686_110--Hb_009711_030 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_003020_230--Hb_001824_070 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_005997_010--Hb_009954_040 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_005997_010--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
189.877 52.8898 44.8263 54.3287 143.915 229.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
290.411 261.813 160.659 91.3711 37.1542

CAGE analysis