Hb_000371_100

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig371: 223169-224281
Sequence    

Annotation

kegg
ID rcu:RCOM_0553150
description geranyl geranyl pyrophosphate synthase, putative (EC:1.3.1.74)
nr
ID Q94ID7.1
description RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
swissprot
ID Q94ID7
description Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
trembl
ID A9ZN20
description Geranylgeranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGGPS PE=2 SV=1
Gene Ontology
ID GO:0009507
description geranylgeranyl pyrophosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38045: 223127-224429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_100 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
2 Hb_005672_020 0.1004878514 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
3 Hb_001504_030 0.1139889929 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
4 Hb_001828_040 0.1170066841 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
5 Hb_000028_110 0.1183516675 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
6 Hb_002496_020 0.1192055877 - - DNA binding protein, putative [Ricinus communis]
7 Hb_001314_080 0.1198748361 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
8 Hb_010883_040 0.1221616358 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
9 Hb_009767_130 0.1227804419 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
10 Hb_002304_080 0.1248511063 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
11 Hb_000300_660 0.1250706229 - - unknown [Glycine max]
12 Hb_006538_120 0.1273695539 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
13 Hb_000368_090 0.128598053 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
14 Hb_000327_110 0.1301694772 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
15 Hb_000920_030 0.1366097361 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_001769_170 0.1378944382 - - 50S ribosomal protein L31, putative [Ricinus communis]
17 Hb_113818_010 0.1386163712 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
18 Hb_114310_110 0.1391071815 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_007054_070 0.1391764238 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
20 Hb_000331_490 0.139403719 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000371_100 Hb_000371_100 Hb_005672_020 Hb_005672_020 Hb_000371_100--Hb_005672_020 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_001828_040 Hb_001828_040 Hb_000371_100--Hb_001828_040 Hb_000028_110 Hb_000028_110 Hb_000371_100--Hb_000028_110 Hb_002496_020 Hb_002496_020 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_002304_080 Hb_002304_080 Hb_005672_020--Hb_002304_080 Hb_005672_020--Hb_001828_040 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_021346_030 Hb_021346_030 Hb_005672_020--Hb_021346_030 Hb_005672_020--Hb_002496_020 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001504_030--Hb_001314_080 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_002079_030 Hb_002079_030 Hb_001828_040--Hb_002079_030 Hb_000108_050 Hb_000108_050 Hb_001828_040--Hb_000108_050 Hb_001828_040--Hb_001504_030 Hb_011486_040 Hb_011486_040 Hb_001828_040--Hb_011486_040 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_002496_020--Hb_001584_200 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.8432 28.3077 100.677 107.376 38.3901 88.5138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.438 70.095 71.7313 20.5369 220.309

CAGE analysis