Hb_000372_040

Information

Type -
Description -
Location Contig372: 116582-121537
Sequence    

Annotation

kegg
ID rcu:RCOM_0891600
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_002523640.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q54D08
description Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1
trembl
ID B9SCC1
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0891600 PE=4 SV=1
Gene Ontology
ID GO:0016905
description protein lst8 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38065: 116638-121613 , PASA_asmbl_38066: 119417-121327 , PASA_asmbl_38067: 116646-121613 , PASA_asmbl_38068: 116652-121668
cDNA
(Sanger)
(ID:Location)		 010_J09.ab1: 119437-121664 , 011_A22.ab1: 118250-121668 , 018_N13.ab1: 118245-121613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000372_040 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002475_050 0.0563318342 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
3 Hb_004881_050 0.0682092929 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
4 Hb_079326_010 0.071202997 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
5 Hb_002739_080 0.0725967356 - - cystathionine beta-lyase, putative [Ricinus communis]
6 Hb_005000_270 0.0787605108 - - unnamed protein product [Vitis vinifera]
7 Hb_000134_360 0.0790942643 - - PREDICTED: protein gar2 [Jatropha curcas]
8 Hb_000318_140 0.0829360227 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
9 Hb_002955_010 0.0857207309 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
10 Hb_002986_050 0.0868777754 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
11 Hb_063047_010 0.0873506852 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
12 Hb_003581_020 0.0891131094 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
13 Hb_008528_010 0.0916331829 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
14 Hb_000035_400 0.0916492162 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
15 Hb_001341_050 0.0917997187 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
16 Hb_000684_180 0.0930859367 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
17 Hb_005129_050 0.0935306628 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
18 Hb_000631_150 0.0973424588 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
19 Hb_003216_110 0.0985952074 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
20 Hb_000317_440 0.1003623446 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000372_040 Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_000372_040--Hb_002475_050 Hb_004881_050 Hb_004881_050 Hb_000372_040--Hb_004881_050 Hb_079326_010 Hb_079326_010 Hb_000372_040--Hb_079326_010 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_002475_050--Hb_004881_050 Hb_002475_050--Hb_002739_080 Hb_002475_050--Hb_005000_270 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_079326_010--Hb_000134_360 Hb_003216_110 Hb_003216_110 Hb_002739_080--Hb_003216_110 Hb_002048_090 Hb_002048_090 Hb_002739_080--Hb_002048_090 Hb_002739_080--Hb_079326_010 Hb_002159_040 Hb_002159_040 Hb_002739_080--Hb_002159_040 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.271 28.1872 24.6982 22.3633 114.443 182.643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.5411 29.52 36.7712 26.836 22.4037

CAGE analysis