Hb_000373_010

Information

Type -
Description -
Location Contig373: 8616-12493
Sequence    

Annotation

kegg
ID rcu:RCOM_0576180
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002531801.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9T0N2
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0576180 PE=3 SV=1
Gene Ontology
ID GO:0005576
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38093: 9156-10617 , PASA_asmbl_38094: 9641-9818 , PASA_asmbl_38096: 10840-10962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_011028_030 0.0679053473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002155_020 0.0679544351 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
4 Hb_000644_010 0.0728979322 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
5 Hb_000680_130 0.0767705219 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_002407_090 0.07681815 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
7 Hb_096224_050 0.0792924215 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
8 Hb_000270_640 0.0872407619 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
9 Hb_000608_290 0.087491786 - - thioredoxin f-type, putative [Ricinus communis]
10 Hb_000705_040 0.0911927749 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000968_010 0.0950545629 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
12 Hb_004979_080 0.0988694625 - - kinase, putative [Ricinus communis]
13 Hb_001248_070 0.0990931508 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
14 Hb_003643_080 0.0999077705 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_011104_020 0.1006702304 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
16 Hb_033363_030 0.1027907215 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
17 Hb_004979_070 0.105188223 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
18 Hb_046739_010 0.1058851365 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_007718_030 0.110191142 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_003125_090 0.1122936722 - - -

Gene co-expression network

sample Hb_000373_010 Hb_000373_010 Hb_011028_030 Hb_011028_030 Hb_000373_010--Hb_011028_030 Hb_002155_020 Hb_002155_020 Hb_000373_010--Hb_002155_020 Hb_000644_010 Hb_000644_010 Hb_000373_010--Hb_000644_010 Hb_000680_130 Hb_000680_130 Hb_000373_010--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_096224_050 Hb_096224_050 Hb_000373_010--Hb_096224_050 Hb_011028_030--Hb_002155_020 Hb_046739_010 Hb_046739_010 Hb_011028_030--Hb_046739_010 Hb_011028_030--Hb_002407_090 Hb_000031_320 Hb_000031_320 Hb_011028_030--Hb_000031_320 Hb_011028_030--Hb_000644_010 Hb_003643_080 Hb_003643_080 Hb_002155_020--Hb_003643_080 Hb_002155_020--Hb_000644_010 Hb_002155_020--Hb_000680_130 Hb_002155_020--Hb_002407_090 Hb_000644_010--Hb_003643_080 Hb_000644_010--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_000644_010--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110 Hb_000705_040 Hb_000705_040 Hb_000680_130--Hb_000705_040 Hb_002636_070 Hb_002636_070 Hb_000680_130--Hb_002636_070 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_001579_060 Hb_001579_060 Hb_000680_130--Hb_001579_060 Hb_002407_090--Hb_046739_010 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011104_020 Hb_011104_020 Hb_002407_090--Hb_011104_020 Hb_000270_090 Hb_000270_090 Hb_002407_090--Hb_000270_090 Hb_007904_110 Hb_007904_110 Hb_096224_050--Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_096224_050--Hb_004979_070 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.29545 2.15478 1.40455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0254223 0 0.45907 4.27667

CAGE analysis