Hb_000373_050

Information

Type -
Description -
Location Contig373: 58747-62243
Sequence    

Annotation

kegg
ID tcc:TCM_035511
description Nucleotide binding,nucleic acid binding
nr
ID XP_012066049.1
description PREDICTED: protein WHI3 [Jatropha curcas]
swissprot
ID Q6JB11
description Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays GN=MEG5 PE=2 SV=1
trembl
ID A0A067L3G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25202 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein with multiple splicing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38100: 58855-62186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_050 0.0 - - PREDICTED: protein WHI3 [Jatropha curcas]
2 Hb_003647_140 0.057232372 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
3 Hb_007254_020 0.0719691939 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
4 Hb_000976_120 0.0738345493 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
5 Hb_014834_150 0.0740479617 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000270_310 0.0767963057 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
7 Hb_001863_380 0.0770010529 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
8 Hb_001623_270 0.0802320268 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_000580_020 0.0828559617 - - unnamed protein product [Vitis vinifera]
10 Hb_003861_060 0.0833420357 - - PREDICTED: treacle protein [Jatropha curcas]
11 Hb_000260_630 0.0833762984 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
12 Hb_003513_010 0.0836205248 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
13 Hb_000336_210 0.0845496019 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
14 Hb_171900_090 0.0852117823 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000137_040 0.0861379984 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
16 Hb_003938_090 0.0863951201 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000599_260 0.0879762523 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
18 Hb_012565_070 0.0887664577 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_000230_400 0.088951015 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002307_180 0.0891489624 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_050 Hb_000373_050 Hb_003647_140 Hb_003647_140 Hb_000373_050--Hb_003647_140 Hb_007254_020 Hb_007254_020 Hb_000373_050--Hb_007254_020 Hb_000976_120 Hb_000976_120 Hb_000373_050--Hb_000976_120 Hb_014834_150 Hb_014834_150 Hb_000373_050--Hb_014834_150 Hb_000270_310 Hb_000270_310 Hb_000373_050--Hb_000270_310 Hb_001863_380 Hb_001863_380 Hb_000373_050--Hb_001863_380 Hb_003647_140--Hb_014834_150 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_003647_140--Hb_000976_120 Hb_003513_010 Hb_003513_010 Hb_003647_140--Hb_003513_010 Hb_001946_400 Hb_001946_400 Hb_003647_140--Hb_001946_400 Hb_002435_100 Hb_002435_100 Hb_007254_020--Hb_002435_100 Hb_000292_100 Hb_000292_100 Hb_007254_020--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_007254_020--Hb_000230_460 Hb_000176_020 Hb_000176_020 Hb_007254_020--Hb_000176_020 Hb_171900_090 Hb_171900_090 Hb_007254_020--Hb_171900_090 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_161574_020 Hb_161574_020 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.65847 12.9702 23.963 14.4773 13.1973 11.6022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.585 24.9795 10.2921 10.9524 17.3204

CAGE analysis