Hb_000373_080

Information

Type -
Description -
Location Contig373: 126228-129687
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21280g
description POPTRDRAFT_559359; serine decarboxylase family protein
nr
ID XP_012066036.1
description PREDICTED: serine decarboxylase [Jatropha curcas]
swissprot
ID Q9MA74
description Serine decarboxylase OS=Arabidopsis thaliana GN=SDC PE=1 SV=1
trembl
ID A0A067L6X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25194 PE=3 SV=1
Gene Ontology
ID GO:0016831
description serine decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38112: 126260-129726 , PASA_asmbl_38113: 126280-129613
cDNA
(Sanger)
(ID:Location)		 001_L16.ab1: 126262-128626

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_080 0.0 - - PREDICTED: serine decarboxylase [Jatropha curcas]
2 Hb_003186_020 0.0491074424 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
3 Hb_000317_510 0.0498676271 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
4 Hb_001377_310 0.0514778307 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
5 Hb_001005_030 0.0558735336 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_000214_050 0.0584008562 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
7 Hb_000362_170 0.0624630758 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
8 Hb_016777_040 0.0634806757 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
9 Hb_000737_030 0.0653698156 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
10 Hb_002811_270 0.0655943769 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
11 Hb_002326_110 0.0659912967 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
12 Hb_138435_010 0.0664274549 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
13 Hb_012506_030 0.0702977492 - - AP-2 complex subunit alpha, putative [Ricinus communis]
14 Hb_008568_020 0.0714718944 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_001269_230 0.0715044506 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
16 Hb_001518_080 0.0717243397 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
17 Hb_004586_060 0.0719543049 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
18 Hb_002615_120 0.0724028095 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
19 Hb_103747_020 0.0738928227 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
20 Hb_002326_040 0.0742567886 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_000373_080 Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_103747_020 Hb_103747_020 Hb_000317_510--Hb_103747_020 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000317_510--Hb_000362_170 Hb_000317_510--Hb_001005_030 Hb_002054_050 Hb_002054_050 Hb_000317_510--Hb_002054_050 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_001005_030--Hb_000362_170 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_001005_030--Hb_003186_020 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_000214_050--Hb_001377_310 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_000362_170--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000362_170--Hb_000214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.2926 61.3243 109.209 76.5071 63.934 78.1931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9965 35.6773 46.6623 66.2732 65.637

CAGE analysis