Hb_000373_120

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig373: 155406-167489
Sequence    

Annotation

kegg
ID rcu:RCOM_0454040
description transcription factor, putative
nr
ID XP_012066032.1
description PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
swissprot
ID P48504
description Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067L6X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25189 PE=4 SV=1
Gene Ontology
ID GO:0008121
description sequence-specific dna binding transcription factors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38117: 155476-157940 , PASA_asmbl_38118: 158797-161187 , PASA_asmbl_38119: 158848-159383 , PASA_asmbl_38120: 162925-167544
cDNA
(Sanger)
(ID:Location)		 014_A05.ab1: 155490-157940 , 022_L19.ab1: 162923-167458 , 023_C12.ab1: 162941-167470

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_120 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
2 Hb_001421_060 0.0667484878 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
3 Hb_000270_370 0.0693864892 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
4 Hb_000479_090 0.0738305366 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
5 Hb_000059_370 0.0739732932 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
6 Hb_010068_020 0.0752167606 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
7 Hb_004375_100 0.0772329215 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
8 Hb_003599_040 0.077538992 - - unnamed protein product [Vitis vinifera]
9 Hb_001616_040 0.0781212283 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
10 Hb_001016_030 0.0787324061 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
11 Hb_005736_060 0.079230618 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
12 Hb_012053_070 0.0797127362 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
13 Hb_017413_010 0.0816399309 - - -
14 Hb_159809_020 0.0816571419 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000384_100 0.0831123925 - - hydrolase, putative [Ricinus communis]
16 Hb_001140_370 0.0833675109 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
17 Hb_000221_160 0.0835630805 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
18 Hb_015807_040 0.0837018268 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
19 Hb_000201_120 0.0841983521 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
20 Hb_002477_070 0.0843131884 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_120 Hb_000373_120 Hb_001421_060 Hb_001421_060 Hb_000373_120--Hb_001421_060 Hb_000270_370 Hb_000270_370 Hb_000373_120--Hb_000270_370 Hb_000479_090 Hb_000479_090 Hb_000373_120--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000373_120--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000373_120--Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_000373_120--Hb_004375_100 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040 Hb_000384_100 Hb_000384_100 Hb_000479_090--Hb_000384_100 Hb_000479_090--Hb_000059_370 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_010068_020--Hb_004375_100 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_010068_020--Hb_000384_100 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4418 4.58377 5.60134 10.4521 11.8881 11.31
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7997 27.9919 13.7868 11.8202 9.22617

CAGE analysis