Hb_000373_150

Information

Type -
Description -
Location Contig373: 192022-192497
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21350g
description POPTRDRAFT_863698; hypothetical protein
nr
ID XP_012066023.1
description PREDICTED: protein FAM188A [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25186 PE=4 SV=1
Gene Ontology
ID GO:0044237
description protein fam188a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38124: 169765-192700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_150 0.0 - - PREDICTED: protein FAM188A [Jatropha curcas]
2 Hb_000125_170 0.0670537726 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
3 Hb_093084_060 0.0725742439 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
4 Hb_000521_260 0.0965201774 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
5 Hb_001780_020 0.0986671657 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003052_140 0.0995103294 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
7 Hb_003464_050 0.1004991773 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
8 Hb_008511_090 0.1008154995 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
9 Hb_002400_310 0.1019293952 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
10 Hb_001677_210 0.1024643065 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
11 Hb_002248_080 0.1025126209 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
12 Hb_003455_020 0.1026747164 - - PREDICTED: transportin-1 [Jatropha curcas]
13 Hb_000070_080 0.1028554769 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_001178_140 0.1049249447 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
15 Hb_007813_040 0.1049890604 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
16 Hb_004767_050 0.1051528194 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
17 Hb_000291_190 0.1053352746 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
18 Hb_005675_040 0.1054331467 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
19 Hb_001005_190 0.1065740104 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
20 Hb_006586_050 0.1067034812 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_150 Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_000373_150--Hb_000125_170 Hb_093084_060 Hb_093084_060 Hb_000373_150--Hb_093084_060 Hb_000521_260 Hb_000521_260 Hb_000373_150--Hb_000521_260 Hb_001780_020 Hb_001780_020 Hb_000373_150--Hb_001780_020 Hb_003052_140 Hb_003052_140 Hb_000373_150--Hb_003052_140 Hb_003464_050 Hb_003464_050 Hb_000373_150--Hb_003464_050 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_000125_170--Hb_003464_050 Hb_002400_310 Hb_002400_310 Hb_093084_060--Hb_002400_310 Hb_181235_010 Hb_181235_010 Hb_093084_060--Hb_181235_010 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_004837_040 Hb_004837_040 Hb_093084_060--Hb_004837_040 Hb_075481_030 Hb_075481_030 Hb_000521_260--Hb_075481_030 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_006588_200 Hb_006588_200 Hb_001780_020--Hb_006588_200 Hb_000402_080 Hb_000402_080 Hb_001780_020--Hb_000402_080 Hb_004195_200 Hb_004195_200 Hb_001780_020--Hb_004195_200 Hb_002375_010 Hb_002375_010 Hb_001780_020--Hb_002375_010 Hb_001347_040 Hb_001347_040 Hb_001780_020--Hb_001347_040 Hb_002248_080 Hb_002248_080 Hb_001780_020--Hb_002248_080 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9506 24.6314 11.8271 13.2173 22.374 23.5335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7533 20.2461 23.9736 15.0439 3.67829

CAGE analysis