Hb_000373_170

Information

Type -
Description -
Location Contig373: 220123-239757
Sequence    

Annotation

kegg
ID rcu:RCOM_0453890
description Exocyst complex component, putative
nr
ID XP_012066021.1
description PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
swissprot
ID Q8S3U9
description Exocyst complex component SEC5A OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1
trembl
ID A0A067L6X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25184 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38128: 220383-239747 , PASA_asmbl_38129: 228511-239747 , PASA_asmbl_38130: 220383-235241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_170 0.0 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
2 Hb_000996_020 0.044328095 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_004517_020 0.0506398689 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
4 Hb_000445_060 0.0582776069 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
5 Hb_001723_010 0.0586323535 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
6 Hb_000661_120 0.0599684734 - - cap binding protein, putative [Ricinus communis]
7 Hb_002768_050 0.0603477056 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
8 Hb_000110_350 0.060505237 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
9 Hb_003929_210 0.0615002699 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_003711_010 0.0619796011 - - isopropylmalate synthase, putative [Ricinus communis]
11 Hb_002968_070 0.0632900824 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
12 Hb_003142_040 0.0640554351 - - Sf3a3 [Gossypium arboreum]
13 Hb_003939_060 0.0649843845 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000008_240 0.0662025153 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000684_510 0.0684869604 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
16 Hb_000977_300 0.0685332814 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
17 Hb_000676_330 0.0690407764 - - protein with unknown function [Ricinus communis]
18 Hb_000340_030 0.0693879815 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_000318_150 0.0705452446 - - RNA-binding protein Nova-1, putative [Ricinus communis]
20 Hb_002016_090 0.070656826 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_170 Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000661_120 Hb_000661_120 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_000996_020--Hb_000445_060 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000445_060--Hb_000110_350 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000120_910 Hb_000661_120--Hb_000340_030 Hb_000661_120--Hb_000529_060 Hb_000661_120--Hb_000868_120 Hb_002768_050--Hb_000110_350 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1386 34.8116 26.1729 19.1044 14.1393 15.5609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5744 10.8521 10.1892 25.0484 21.5058

CAGE analysis