Hb_000373_180

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig373: 242670-244010
Sequence    

Annotation

kegg
ID rcu:RCOM_0453870
description transcription factor, putative
nr
ID KDP42996.1
description hypothetical protein JCGZ_25182 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25182 PE=4 SV=1
Gene Ontology
ID GO:0003682
description sequence-specific dna binding transcription factors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38131: 242010-242165 , PASA_asmbl_38132: 242219-244307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_180 0.0 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
2 Hb_000264_020 0.0766855692 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
3 Hb_002298_050 0.1121622365 - - serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_146225_010 0.1138728753 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
5 Hb_001894_170 0.130010586 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
6 Hb_012053_050 0.1316574972 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
7 Hb_003326_020 0.1341632384 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
8 Hb_001157_010 0.1343240737 - - deoxyhypusine synthase, putative [Ricinus communis]
9 Hb_000282_070 0.1346782431 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
10 Hb_012545_050 0.1357959285 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
11 Hb_002759_240 0.1360113031 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
12 Hb_000239_030 0.1366822636 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
13 Hb_001052_030 0.1374989745 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
14 Hb_000260_310 0.1382452083 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
15 Hb_005841_050 0.1396980148 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
16 Hb_006594_020 0.1399831239 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
17 Hb_017434_050 0.1428176835 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
18 Hb_001846_070 0.1459067457 - - PREDICTED: fructokinase-1 [Jatropha curcas]
19 Hb_001638_020 0.1477616474 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_003185_050 0.1545929726 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_180 Hb_000373_180 Hb_000264_020 Hb_000264_020 Hb_000373_180--Hb_000264_020 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_146225_010 Hb_146225_010 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_002298_050--Hb_005841_050 Hb_002298_050--Hb_000264_020 Hb_002298_050--Hb_003326_020 Hb_002298_050--Hb_146225_010 Hb_002053_060 Hb_002053_060 Hb_002298_050--Hb_002053_060 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_146225_010--Hb_005841_050 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_001894_170--Hb_002759_240 Hb_017434_050 Hb_017434_050 Hb_001894_170--Hb_017434_050 Hb_001894_170--Hb_000264_020 Hb_000723_190 Hb_000723_190 Hb_001894_170--Hb_000723_190 Hb_006594_020 Hb_006594_020 Hb_001894_170--Hb_006594_020 Hb_001369_600 Hb_001369_600 Hb_012053_050--Hb_001369_600 Hb_001776_170 Hb_001776_170 Hb_012053_050--Hb_001776_170 Hb_000589_160 Hb_000589_160 Hb_012053_050--Hb_000589_160 Hb_012053_050--Hb_002759_240 Hb_001488_370 Hb_001488_370 Hb_012053_050--Hb_001488_370 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_003326_020--Hb_000239_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5708 4.4628 1.41851 7.87916 4.45677 4.03896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8488 38.503 31.398 6.01902 2.21332

CAGE analysis