Hb_000373_200

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig373: 254749-257708
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06920g
description POPTRDRAFT_551322; trihelix DNA-binding family protein
nr
ID XP_011044212.1
description PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID B9GTJ3
description Trihelix DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0002s06920g PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38133: 254593-257696 , PASA_asmbl_38134: 255552-256166 , PASA_asmbl_38135: 255197-255432
cDNA
(Sanger)
(ID:Location)		 050_J09.ab1: 254613-254996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_200 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
2 Hb_001728_110 0.1506596416 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
3 Hb_000008_070 0.1512563173 - - kinase, putative [Ricinus communis]
4 Hb_001278_020 0.1575244883 - - sucrose synthase 6 [Hevea brasiliensis]
5 Hb_001257_050 0.1652264064 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
6 Hb_001474_060 0.1690695344 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
7 Hb_000590_110 0.169363456 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003768_020 0.171639696 - - PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
9 Hb_005532_030 0.1723282627 - - DNA binding protein, putative [Ricinus communis]
10 Hb_019654_180 0.1758344423 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_011649_010 0.1766573734 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
12 Hb_002336_050 0.1773266289 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000190_230 0.1781123315 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
14 Hb_002475_060 0.1793103434 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
15 Hb_001999_070 0.1809055634 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
16 Hb_003849_070 0.1817217907 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
17 Hb_169383_010 0.1819914469 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
18 Hb_002003_130 0.1820709124 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
19 Hb_002338_040 0.1824333007 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001729_030 0.1837838674 - - hypothetical protein VITISV_044457 [Vitis vinifera]

Gene co-expression network

sample Hb_000373_200 Hb_000373_200 Hb_001728_110 Hb_001728_110 Hb_000373_200--Hb_001728_110 Hb_000008_070 Hb_000008_070 Hb_000373_200--Hb_000008_070 Hb_001278_020 Hb_001278_020 Hb_000373_200--Hb_001278_020 Hb_001257_050 Hb_001257_050 Hb_000373_200--Hb_001257_050 Hb_001474_060 Hb_001474_060 Hb_000373_200--Hb_001474_060 Hb_000590_110 Hb_000590_110 Hb_000373_200--Hb_000590_110 Hb_001421_040 Hb_001421_040 Hb_001728_110--Hb_001421_040 Hb_003177_050 Hb_003177_050 Hb_001728_110--Hb_003177_050 Hb_005488_190 Hb_005488_190 Hb_001728_110--Hb_005488_190 Hb_000679_080 Hb_000679_080 Hb_001728_110--Hb_000679_080 Hb_001231_010 Hb_001231_010 Hb_001728_110--Hb_001231_010 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_000008_070--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_000008_070--Hb_001474_060 Hb_000661_270 Hb_000661_270 Hb_001278_020--Hb_000661_270 Hb_000358_090 Hb_000358_090 Hb_001278_020--Hb_000358_090 Hb_001278_020--Hb_001541_200 Hb_001657_020 Hb_001657_020 Hb_001278_020--Hb_001657_020 Hb_005295_020 Hb_005295_020 Hb_001278_020--Hb_005295_020 Hb_003929_240 Hb_003929_240 Hb_001257_050--Hb_003929_240 Hb_001257_050--Hb_001474_060 Hb_001257_050--Hb_000139_060 Hb_000005_370 Hb_000005_370 Hb_001257_050--Hb_000005_370 Hb_001257_050--Hb_001541_200 Hb_001474_060--Hb_000005_370 Hb_010810_060 Hb_010810_060 Hb_001474_060--Hb_010810_060 Hb_005730_060 Hb_005730_060 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180 Hb_000139_360 Hb_000139_360 Hb_000590_110--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_000590_110--Hb_002042_210 Hb_044478_010 Hb_044478_010 Hb_000590_110--Hb_044478_010 Hb_000049_100 Hb_000049_100 Hb_000590_110--Hb_000049_100 Hb_000369_110 Hb_000369_110 Hb_000590_110--Hb_000369_110 Hb_008195_090 Hb_008195_090 Hb_000590_110--Hb_008195_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.28992 1.85488 19.3209 23.4656 0.924911 2.10202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298782 0.102858 0.0279819 1.34257 47.5126

CAGE analysis