Hb_000373_210

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig373: 268245-271427
Sequence    

Annotation

kegg
ID rcu:RCOM_0453340
description hypothetical protein
nr
ID XP_012066016.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID Q9LZS0
description Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1
trembl
ID A0A067LFU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25180 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38137: 268645-271355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_210 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_001053_070 0.0247130059 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
3 Hb_031862_220 0.0275863688 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
4 Hb_001049_130 0.0278775721 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_002374_480 0.0374733467 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_180007_010 0.0419349716 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_001936_100 0.0422513174 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002400_200 0.043526929 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
9 Hb_153106_010 0.0520486136 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_004129_170 0.057236008 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
11 Hb_000251_160 0.0596560103 - - chlorophyll A/B binding protein, putative [Ricinus communis]
12 Hb_001348_160 0.0598239542 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000987_030 0.0647272735 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
14 Hb_000251_150 0.0676466966 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_004452_070 0.0678542304 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
16 Hb_132840_050 0.0715475429 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
17 Hb_002890_170 0.0724192406 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
18 Hb_086022_020 0.0725458754 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
19 Hb_004899_190 0.0729115494 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
20 Hb_000703_340 0.0729191454 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_210 Hb_000373_210 Hb_001053_070 Hb_001053_070 Hb_000373_210--Hb_001053_070 Hb_031862_220 Hb_031862_220 Hb_000373_210--Hb_031862_220 Hb_001049_130 Hb_001049_130 Hb_000373_210--Hb_001049_130 Hb_002374_480 Hb_002374_480 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_001936_100 Hb_001936_100 Hb_000373_210--Hb_001936_100 Hb_001053_070--Hb_001049_130 Hb_001053_070--Hb_031862_220 Hb_001053_070--Hb_001936_100 Hb_002400_200 Hb_002400_200 Hb_001053_070--Hb_002400_200 Hb_000987_030 Hb_000987_030 Hb_001053_070--Hb_000987_030 Hb_031862_220--Hb_001049_130 Hb_031862_220--Hb_001936_100 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150 Hb_001049_130--Hb_001936_100 Hb_001049_130--Hb_000987_030 Hb_001049_130--Hb_002400_200 Hb_002374_480--Hb_180007_010 Hb_004129_170 Hb_004129_170 Hb_002374_480--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002374_480--Hb_153106_010 Hb_000251_160 Hb_000251_160 Hb_002374_480--Hb_000251_160 Hb_002374_480--Hb_002400_200 Hb_180007_010--Hb_153106_010 Hb_132840_050 Hb_132840_050 Hb_180007_010--Hb_132840_050 Hb_180007_010--Hb_000251_160 Hb_180007_010--Hb_004129_170 Hb_001936_100--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.73257 3.54883 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01773 0 0 0 17.4955

CAGE analysis