Hb_000373_220

Information

Type -
Description -
Location Contig373: 288217-291262
Sequence    

Annotation

kegg
ID rcu:RCOM_0239770
description Auxin-induced protein 5NG4, putative
nr
ID XP_002534346.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q6NMB7
description WAT1-related protein At1g43650 OS=Arabidopsis thaliana GN=At1g43650 PE=2 SV=1
trembl
ID B9T7X7
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0239770 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at1g43650-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_220 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_053935_010 0.027162895 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
3 Hb_128460_020 0.0492972832 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
4 Hb_004241_190 0.0528583616 - - -
5 Hb_000668_220 0.058625187 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
6 Hb_000061_060 0.0671283287 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
7 Hb_014361_140 0.0730261445 - - PREDICTED: peroxidase 51 [Jatropha curcas]
8 Hb_158110_010 0.0809480402 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
9 Hb_004724_290 0.0811488377 transcription factor TF Family: NAC -
10 Hb_000769_030 0.0835591207 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_173029_010 0.0844955042 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_006916_220 0.0932286834 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
13 Hb_011429_010 0.0946873578 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
14 Hb_010369_010 0.0955182451 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000628_050 0.10518468 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_001511_200 0.1069646878 - - Embryonic abundant protein, putative [Ricinus communis]
17 Hb_184752_010 0.1070642223 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
18 Hb_002006_110 0.1183730387 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
19 Hb_004924_020 0.1188079421 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_008963_010 0.1196129974 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000373_220 Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_000373_220--Hb_053935_010 Hb_128460_020 Hb_128460_020 Hb_000373_220--Hb_128460_020 Hb_004241_190 Hb_004241_190 Hb_000373_220--Hb_004241_190 Hb_000668_220 Hb_000668_220 Hb_000373_220--Hb_000668_220 Hb_000061_060 Hb_000061_060 Hb_000373_220--Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_000373_220--Hb_014361_140 Hb_053935_010--Hb_128460_020 Hb_053935_010--Hb_004241_190 Hb_053935_010--Hb_000061_060 Hb_053935_010--Hb_014361_140 Hb_158110_010 Hb_158110_010 Hb_053935_010--Hb_158110_010 Hb_128460_020--Hb_014361_140 Hb_128460_020--Hb_000061_060 Hb_128460_020--Hb_004241_190 Hb_128460_020--Hb_158110_010 Hb_004241_190--Hb_000061_060 Hb_000628_050 Hb_000628_050 Hb_004241_190--Hb_000628_050 Hb_173029_010 Hb_173029_010 Hb_004241_190--Hb_173029_010 Hb_000668_220--Hb_173029_010 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_000668_220--Hb_000628_050 Hb_000061_060--Hb_014361_140 Hb_104855_010 Hb_104855_010 Hb_000061_060--Hb_104855_010 Hb_000061_060--Hb_158110_010 Hb_014361_140--Hb_104855_010 Hb_014361_140--Hb_158110_010 Hb_014361_140--Hb_004241_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.476818 0.261114 0.382999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis