Hb_000373_240

Information

Type -
Description -
Location Contig373: 327378-337228
Sequence    

Annotation

kegg
ID tcc:TCM_035617
description Uncharacterized protein isoform 1
nr
ID XP_012080749.1
description PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15199 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38147: 327381-327653 , PASA_asmbl_38148: 327662-336962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_240 0.0 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
2 Hb_002391_300 0.0465136625 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
3 Hb_000889_020 0.0597016304 - - ribosome biogenesis protein brix, putative [Ricinus communis]
4 Hb_003406_010 0.0650521667 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
5 Hb_007218_080 0.0697968656 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
6 Hb_001789_240 0.0721478708 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
7 Hb_000690_130 0.0725746681 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
8 Hb_004096_030 0.0741544938 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
9 Hb_063090_010 0.0772401169 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
10 Hb_001006_140 0.0778260938 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
11 Hb_002079_010 0.0801258066 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
12 Hb_000058_100 0.0804087387 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
13 Hb_000076_120 0.0808812403 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
14 Hb_001866_110 0.0823646584 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
15 Hb_000926_280 0.083470582 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
16 Hb_000494_040 0.0841113815 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
17 Hb_002616_050 0.0855904819 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
18 Hb_004310_130 0.0857777854 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
19 Hb_003010_030 0.0866265922 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
20 Hb_003030_070 0.0872173253 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_240 Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_063090_010 Hb_063090_010 Hb_001789_240--Hb_063090_010 Hb_009133_010 Hb_009133_010 Hb_001789_240--Hb_009133_010 Hb_001789_240--Hb_006692_030 Hb_002205_040 Hb_002205_040 Hb_001789_240--Hb_002205_040 Hb_001789_240--Hb_002391_300 Hb_006064_010 Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4462 7.18204 9.17089 6.68065 19.3894 28.0384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3195 17.0955 11.6847 9.72414 9.85066

CAGE analysis