Hb_000373_260

Information

Type -
Description -
Location Contig373: 369997-371599
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06820g
description POPTRDRAFT_410576; hypothetical protein
nr
ID XP_002300916.2
description hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GTI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06820g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_260 0.0 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
2 Hb_005214_050 0.0906182332 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
3 Hb_011355_020 0.0926204514 - - extensin, proline-rich protein, putative [Ricinus communis]
4 Hb_006026_020 0.0938422679 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
5 Hb_004970_100 0.1058049534 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
6 Hb_004031_050 0.1067800348 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
7 Hb_000149_020 0.1139340486 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
8 Hb_107495_060 0.1154013063 - - Cell division protein kinase, putative [Ricinus communis]
9 Hb_002897_030 0.1160477539 - - PREDICTED: methylesterase 17 [Jatropha curcas]
10 Hb_000740_080 0.1315209922 - - -
11 Hb_001645_030 0.1326372244 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
12 Hb_005916_040 0.1351420172 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
13 Hb_000616_100 0.1390365407 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_000243_340 0.1424834825 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
15 Hb_072670_010 0.1428177073 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
16 Hb_002304_100 0.1464145069 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
17 Hb_087314_010 0.1483735351 - - -
18 Hb_036029_020 0.1485337463 - - PREDICTED: patellin-3-like [Jatropha curcas]
19 Hb_071433_010 0.1505865018 - - lipid binding protein, putative [Ricinus communis]
20 Hb_038718_010 0.1515409736 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_260 Hb_000373_260 Hb_005214_050 Hb_005214_050 Hb_000373_260--Hb_005214_050 Hb_011355_020 Hb_011355_020 Hb_000373_260--Hb_011355_020 Hb_006026_020 Hb_006026_020 Hb_000373_260--Hb_006026_020 Hb_004970_100 Hb_004970_100 Hb_000373_260--Hb_004970_100 Hb_004031_050 Hb_004031_050 Hb_000373_260--Hb_004031_050 Hb_000149_020 Hb_000149_020 Hb_000373_260--Hb_000149_020 Hb_005214_050--Hb_004031_050 Hb_005214_050--Hb_011355_020 Hb_000568_020 Hb_000568_020 Hb_005214_050--Hb_000568_020 Hb_005214_050--Hb_004970_100 Hb_002897_030 Hb_002897_030 Hb_005214_050--Hb_002897_030 Hb_011355_020--Hb_002897_030 Hb_011355_020--Hb_006026_020 Hb_011355_020--Hb_004031_050 Hb_001198_180 Hb_001198_180 Hb_011355_020--Hb_001198_180 Hb_006026_020--Hb_004970_100 Hb_006026_020--Hb_004031_050 Hb_006026_020--Hb_002897_030 Hb_006026_020--Hb_000149_020 Hb_003777_150 Hb_003777_150 Hb_004970_100--Hb_003777_150 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004970_100--Hb_004031_050 Hb_004031_050--Hb_002897_030 Hb_002522_040 Hb_002522_040 Hb_004031_050--Hb_002522_040 Hb_004031_050--Hb_001198_180 Hb_120040_010 Hb_120040_010 Hb_000149_020--Hb_120040_010 Hb_000740_080 Hb_000740_080 Hb_000149_020--Hb_000740_080 Hb_000149_020--Hb_011355_020 Hb_000897_010 Hb_000897_010 Hb_000149_020--Hb_000897_010 Hb_000149_020--Hb_002897_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108411 2.45386 2.88178 11.606 0.0578581 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.92379 0.334955

CAGE analysis