Hb_000373_270

Information

Type transcription factor
Description TF Family: bZIP
Location Contig373: 380207-386835
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21500g
description POPTRDRAFT_651568; G-box binding factor 4 family protein
nr
ID XP_012080743.1
description PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
swissprot
ID P42777
description G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1
trembl
ID A0A067KEV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15194 PE=4 SV=1
Gene Ontology
ID GO:0003700
description g-box binding factor 4 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38151: 380960-386700 , PASA_asmbl_38152: 382678-382804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_270 0.0 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
2 Hb_001341_030 0.0642102489 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
3 Hb_005147_110 0.0689484796 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_000300_280 0.0766191829 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
5 Hb_004310_060 0.0769422795 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000186_280 0.0776833477 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
7 Hb_000879_140 0.0860810606 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
8 Hb_004678_060 0.089240884 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_008725_250 0.0902579781 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_001975_070 0.0910224934 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
11 Hb_007590_080 0.0919717063 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
12 Hb_000265_150 0.0921967163 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
13 Hb_001969_040 0.0930669668 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_005306_110 0.0935473429 - - casein kinase, putative [Ricinus communis]
15 Hb_018663_020 0.095823994 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
16 Hb_002400_180 0.0958740277 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000768_050 0.097040742 - - hypothetical protein RCOM_0845740 [Ricinus communis]
18 Hb_000645_150 0.0980913513 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001226_180 0.0991510896 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
20 Hb_000310_080 0.0991937842 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_000373_270 Hb_000373_270 Hb_001341_030 Hb_001341_030 Hb_000373_270--Hb_001341_030 Hb_005147_110 Hb_005147_110 Hb_000373_270--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140 Hb_001341_030--Hb_005147_110 Hb_001341_030--Hb_004310_060 Hb_018663_020 Hb_018663_020 Hb_001341_030--Hb_018663_020 Hb_001975_070 Hb_001975_070 Hb_001341_030--Hb_001975_070 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_005147_110--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_005147_110--Hb_018663_020 Hb_000300_280--Hb_004310_060 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_004310_060--Hb_008725_250 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.1122 20.4731 8.8949 8.96467 31.0651 40.345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.1012 21.1164 17.9544 14.6183 6.175

CAGE analysis