Hb_000373_290

Information

Type -
Description -
Location Contig373: 410974-412123
Sequence    

Annotation

kegg
ID cit:102617061
description citrate-binding protein-like
nr
ID Q39962.1
description RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
swissprot
ID Q39962
description Citrate-binding protein OS=Hevea brasiliensis GN=CBP PE=1 SV=1
trembl
ID A0A067GVY1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029073mg PE=4 SV=1
Gene Ontology
ID GO:0005773
description citrate-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38156: 410976-412017
cDNA
(Sanger)
(ID:Location)		 010_J24.ab1: 411193-411998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_290 0.0 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
2 Hb_000920_140 0.1486696252 - - annexin [Manihot esculenta]
3 Hb_001195_580 0.1518747664 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
4 Hb_023988_020 0.156027316 - - PREDICTED: transmembrane protein 19 [Prunus mume]
5 Hb_000641_030 0.1750384643 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
6 Hb_005271_170 0.1753589895 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
7 Hb_019516_040 0.1847029865 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
8 Hb_000613_200 0.187732441 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
9 Hb_000032_240 0.1898518418 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000376_110 0.1908126075 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
11 Hb_007044_210 0.1909845429 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
12 Hb_000548_030 0.1928700115 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
13 Hb_002078_430 0.1959006395 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
14 Hb_000959_360 0.1968556316 - - transporter, putative [Ricinus communis]
15 Hb_000997_260 0.1971107236 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
16 Hb_124315_040 0.1980715179 - - hypothetical protein 19 [Hevea brasiliensis]
17 Hb_001631_080 0.2001390321 - - PREDICTED: importin-5-like [Populus euphratica]
18 Hb_027380_040 0.2019745335 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
19 Hb_001696_030 0.2024512939 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000184_040 0.2048771588 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000373_290 Hb_000373_290 Hb_000920_140 Hb_000920_140 Hb_000373_290--Hb_000920_140 Hb_001195_580 Hb_001195_580 Hb_000373_290--Hb_001195_580 Hb_023988_020 Hb_023988_020 Hb_000373_290--Hb_023988_020 Hb_000641_030 Hb_000641_030 Hb_000373_290--Hb_000641_030 Hb_005271_170 Hb_005271_170 Hb_000373_290--Hb_005271_170 Hb_019516_040 Hb_019516_040 Hb_000373_290--Hb_019516_040 Hb_000920_140--Hb_023988_020 Hb_000376_110 Hb_000376_110 Hb_000920_140--Hb_000376_110 Hb_004032_440 Hb_004032_440 Hb_000920_140--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000920_140--Hb_001696_030 Hb_000762_020 Hb_000762_020 Hb_000920_140--Hb_000762_020 Hb_000920_140--Hb_019516_040 Hb_001195_580--Hb_000641_030 Hb_002863_010 Hb_002863_010 Hb_001195_580--Hb_002863_010 Hb_001195_590 Hb_001195_590 Hb_001195_580--Hb_001195_590 Hb_001195_580--Hb_000376_110 Hb_004724_430 Hb_004724_430 Hb_001195_580--Hb_004724_430 Hb_023988_020--Hb_001696_030 Hb_023988_020--Hb_004032_440 Hb_000184_040 Hb_000184_040 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_023988_020--Hb_005271_170 Hb_003304_050 Hb_003304_050 Hb_000641_030--Hb_003304_050 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_003687_200 Hb_003687_200 Hb_000641_030--Hb_003687_200 Hb_000641_030--Hb_000920_140 Hb_000416_100 Hb_000416_100 Hb_000641_030--Hb_000416_100 Hb_001047_010 Hb_001047_010 Hb_005271_170--Hb_001047_010 Hb_005271_170--Hb_000184_040 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.435 7.98042 2.27 48.1621 94.7786 114.017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
201.796 72.584 21.0382 1.68402 0.251391

CAGE analysis