Hb_000373_300

Information

Type -
Description -
Location Contig373: 414009-416003
Sequence    

Annotation

kegg
ID atr:s01187p00010350
description AMTR_s01187p00010350; hypothetical protein
nr
ID EMT01386.1
description hypothetical protein F775_20382 [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID R7W3W4
description Uncharacterized protein OS=Aegilops tauschii GN=F775_20382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_300 0.0 - - hypothetical protein F775_20382 [Aegilops tauschii]
2 Hb_001141_400 0.1539355832 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
3 Hb_002742_010 0.1891689237 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_002741_030 0.1948927724 - - -
5 Hb_000861_050 0.2078497866 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
6 Hb_001143_010 0.2116614172 - - -
7 Hb_159085_010 0.2116994288 - - -
8 Hb_003773_030 0.217877435 - - -
9 Hb_000922_180 0.2212175435 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
10 Hb_001186_050 0.2236898393 - - -
11 Hb_004055_060 0.2239794958 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
12 Hb_002918_300 0.2245390634 - - -
13 Hb_004691_040 0.2250420686 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
14 Hb_003023_050 0.2263427854 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
15 Hb_000736_010 0.2286933298 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
16 Hb_145890_010 0.2411636789 - - unnamed protein product [Vitis vinifera]
17 Hb_188382_010 0.2434943387 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_028365_010 0.2440037561 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
19 Hb_081207_010 0.2455084673 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
20 Hb_006922_040 0.2464567436 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_300 Hb_000373_300 Hb_001141_400 Hb_001141_400 Hb_000373_300--Hb_001141_400 Hb_002742_010 Hb_002742_010 Hb_000373_300--Hb_002742_010 Hb_002741_030 Hb_002741_030 Hb_000373_300--Hb_002741_030 Hb_000861_050 Hb_000861_050 Hb_000373_300--Hb_000861_050 Hb_001143_010 Hb_001143_010 Hb_000373_300--Hb_001143_010 Hb_159085_010 Hb_159085_010 Hb_000373_300--Hb_159085_010 Hb_001141_400--Hb_002742_010 Hb_028365_010 Hb_028365_010 Hb_001141_400--Hb_028365_010 Hb_010128_110 Hb_010128_110 Hb_001141_400--Hb_010128_110 Hb_188382_010 Hb_188382_010 Hb_001141_400--Hb_188382_010 Hb_001141_400--Hb_159085_010 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_002742_010--Hb_188382_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_001186_050 Hb_001186_050 Hb_002741_030--Hb_001186_050 Hb_145890_010 Hb_145890_010 Hb_002741_030--Hb_145890_010 Hb_010588_010 Hb_010588_010 Hb_002741_030--Hb_010588_010 Hb_000275_010 Hb_000275_010 Hb_002741_030--Hb_000275_010 Hb_030765_010 Hb_030765_010 Hb_002741_030--Hb_030765_010 Hb_005410_030 Hb_005410_030 Hb_000861_050--Hb_005410_030 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_000861_050--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000005_030 Hb_000005_030 Hb_000861_050--Hb_000005_030 Hb_000453_210 Hb_000453_210 Hb_001143_010--Hb_000453_210 Hb_001143_010--Hb_000861_050 Hb_150299_030 Hb_150299_030 Hb_001143_010--Hb_150299_030 Hb_001143_010--Hb_005410_030 Hb_001143_010--Hb_004055_060 Hb_004958_050 Hb_004958_050 Hb_001143_010--Hb_004958_050 Hb_039305_010 Hb_039305_010 Hb_159085_010--Hb_039305_010 Hb_000736_010 Hb_000736_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_000067_020 Hb_000067_020 Hb_159085_010--Hb_000067_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6803 0 0 0 1.34589 1.3753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87138 9.67747 0 0 0

CAGE analysis