Hb_000375_040

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig375: 60901-62195
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07590g
description POPTRDRAFT_207391; hypothetical protein
nr
ID XP_011031021.1
description PREDICTED: myb-related protein 308-like [Populus euphratica]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9H4T1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07590g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_040 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
2 Hb_008953_010 0.0273201125 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
3 Hb_043903_010 0.0295624703 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
4 Hb_000828_030 0.0997255146 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_081224_010 0.1053801021 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
6 Hb_187247_010 0.114853671 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
7 Hb_061590_010 0.11485419 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
8 Hb_005726_030 0.1149326437 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
9 Hb_007337_010 0.1160491502 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
10 Hb_143766_040 0.1162785564 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
11 Hb_004981_020 0.1167923339 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
12 Hb_106528_020 0.1221036053 - - Cationic peroxidase 2 precursor [Theobroma cacao]
13 Hb_007437_010 0.1221984326 - - Polygalacturonase precursor, putative [Ricinus communis]
14 Hb_038238_010 0.1233536971 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
15 Hb_010253_010 0.1248679065 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
16 Hb_006415_020 0.1260932721 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
17 Hb_126040_020 0.1280216303 - - -
18 Hb_003446_030 0.1293875543 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
19 Hb_010358_010 0.1296034821 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_000201_080 0.1302717887 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000375_040 Hb_000375_040 Hb_008953_010 Hb_008953_010 Hb_000375_040--Hb_008953_010 Hb_043903_010 Hb_043903_010 Hb_000375_040--Hb_043903_010 Hb_000828_030 Hb_000828_030 Hb_000375_040--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_000375_040--Hb_081224_010 Hb_187247_010 Hb_187247_010 Hb_000375_040--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_000375_040--Hb_061590_010 Hb_008953_010--Hb_043903_010 Hb_008953_010--Hb_000828_030 Hb_008953_010--Hb_081224_010 Hb_005726_030 Hb_005726_030 Hb_008953_010--Hb_005726_030 Hb_008953_010--Hb_061590_010 Hb_043903_010--Hb_000828_030 Hb_004981_020 Hb_004981_020 Hb_043903_010--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_043903_010--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_043903_010--Hb_007337_010 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_005433_050 Hb_005433_050 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_081224_010--Hb_000828_030 Hb_081224_010--Hb_005433_050 Hb_081224_010--Hb_005726_030 Hb_081224_010--Hb_061590_010 Hb_081224_010--Hb_187247_010 Hb_007437_010 Hb_007437_010 Hb_081224_010--Hb_007437_010 Hb_187247_010--Hb_007337_010 Hb_187247_010--Hb_061590_010 Hb_187247_010--Hb_143766_040 Hb_187247_010--Hb_005726_030 Hb_187247_010--Hb_004981_020 Hb_187247_010--Hb_106528_020 Hb_061590_010--Hb_005726_030 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_061590_010--Hb_007437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193777 0 0 0 0.0207006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.754479 0

CAGE analysis