Hb_000375_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig375: 81582-82724
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05340g
description POPTRDRAFT_1082531; hypothetical protein
nr
ID XP_012088310.1
description PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A067LEL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24026 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_060 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
2 Hb_000979_140 0.093624325 - - kinase family protein [Populus trichocarpa]
3 Hb_005064_070 0.1004427692 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
4 Hb_054865_050 0.1012992138 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_001729_020 0.1041524886 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_000098_180 0.1050376205 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
7 Hb_000853_330 0.1121016838 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_002349_030 0.1122980045 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000197_180 0.1140097718 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
10 Hb_007416_260 0.1142665585 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
11 Hb_009449_100 0.1182357872 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
12 Hb_024714_070 0.1187639871 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_002249_170 0.1196366159 - - copine, putative [Ricinus communis]
14 Hb_012762_040 0.1202315784 - - big map kinase/bmk, putative [Ricinus communis]
15 Hb_003670_030 0.1206132819 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
16 Hb_015778_040 0.1221618281 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
17 Hb_001514_240 0.1229798591 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
18 Hb_001059_060 0.1232862774 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
19 Hb_003417_030 0.1240793488 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
20 Hb_000094_150 0.1250622827 - - -

Gene co-expression network

sample Hb_000375_060 Hb_000375_060 Hb_000979_140 Hb_000979_140 Hb_000375_060--Hb_000979_140 Hb_005064_070 Hb_005064_070 Hb_000375_060--Hb_005064_070 Hb_054865_050 Hb_054865_050 Hb_000375_060--Hb_054865_050 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000098_180 Hb_000098_180 Hb_000375_060--Hb_000098_180 Hb_000853_330 Hb_000853_330 Hb_000375_060--Hb_000853_330 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_048476_040 Hb_048476_040 Hb_005064_070--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_000329_790 Hb_000329_790 Hb_005064_070--Hb_000329_790 Hb_005064_070--Hb_054865_050 Hb_009449_100 Hb_009449_100 Hb_005064_070--Hb_009449_100 Hb_054865_050--Hb_009449_100 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_054865_050--Hb_000098_180 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_001059_060 Hb_001059_060 Hb_000853_330--Hb_001059_060 Hb_000853_330--Hb_000197_180 Hb_009078_020 Hb_009078_020 Hb_000853_330--Hb_009078_020 Hb_010407_030 Hb_010407_030 Hb_000853_330--Hb_010407_030 Hb_006949_060 Hb_006949_060 Hb_000853_330--Hb_006949_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.7524 37.8326 44.4686 36.3335 3.29738 6.43395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73167 12.7897 4.58298 21.6796 25.6964

CAGE analysis