Hb_000375_100

Information

Type -
Description -
Location Contig375: 139656-142366
Sequence    

Annotation

kegg
ID egr:104420178
description valine N-monooxygenase 1-like
nr
ID Q9M7B8.1
description RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
swissprot
ID Q9M7B8
description Valine N-monooxygenase 1 OS=Manihot esculenta GN=CYP79D1 PE=1 SV=1
trembl
ID A0A067KCZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18629 PE=3 SV=1
Gene Ontology
ID GO:0005783
description valine n-monooxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38249: 139669-142432 , PASA_asmbl_38250: 141241-141502
cDNA
(Sanger)
(ID:Location)		 001_G11.ab1: 139675-140474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_100 0.0 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
2 Hb_000010_430 0.0197133971 - - Esterase precursor, putative [Ricinus communis]
3 Hb_007760_060 0.0434569782 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
4 Hb_072952_010 0.0470865947 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
5 Hb_007576_090 0.052061928 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
6 Hb_061336_010 0.0544062616 - - conserved hypothetical protein [Ricinus communis]
7 Hb_028486_020 0.0625368257 - - conserved hypothetical protein [Ricinus communis]
8 Hb_180535_010 0.0648079116 - - -
9 Hb_000816_180 0.0691498761 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
10 Hb_000130_400 0.0784475005 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
11 Hb_000127_240 0.0793655852 - - SAUR39 [Populus tomentosa]
12 Hb_000258_400 0.0879842014 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
13 Hb_006614_020 0.0943904589 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
14 Hb_007218_050 0.0952847106 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000397_060 0.098307978 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_000073_040 0.1000587174 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
17 Hb_002030_010 0.1005922916 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
18 Hb_002307_140 0.1026885039 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
19 Hb_008686_040 0.1050419021 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
20 Hb_072620_010 0.1050587123 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]

Gene co-expression network

sample Hb_000375_100 Hb_000375_100 Hb_000010_430 Hb_000010_430 Hb_000375_100--Hb_000010_430 Hb_007760_060 Hb_007760_060 Hb_000375_100--Hb_007760_060 Hb_072952_010 Hb_072952_010 Hb_000375_100--Hb_072952_010 Hb_007576_090 Hb_007576_090 Hb_000375_100--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000375_100--Hb_061336_010 Hb_028486_020 Hb_028486_020 Hb_000375_100--Hb_028486_020 Hb_000010_430--Hb_007760_060 Hb_000010_430--Hb_072952_010 Hb_000010_430--Hb_007576_090 Hb_000010_430--Hb_061336_010 Hb_000010_430--Hb_028486_020 Hb_000127_240 Hb_000127_240 Hb_007760_060--Hb_000127_240 Hb_007760_060--Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_007760_060--Hb_180535_010 Hb_007760_060--Hb_072952_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_072952_010--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_072952_010--Hb_000816_180 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_007576_090--Hb_180535_010 Hb_007576_090--Hb_000816_180 Hb_007576_090--Hb_061336_010 Hb_007218_050 Hb_007218_050 Hb_007576_090--Hb_007218_050 Hb_061336_010--Hb_000816_180 Hb_061336_010--Hb_180535_010 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_007218_050 Hb_028486_020--Hb_000816_180 Hb_000496_100 Hb_000496_100 Hb_028486_020--Hb_000496_100 Hb_028486_020--Hb_072952_010 Hb_028486_020--Hb_007576_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0415819 630.073 302.673 0 0.194089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0341541 0.0931961 102.691

CAGE analysis