Hb_000375_130

Information

Type -
Description -
Location Contig375: 168382-178470
Sequence    

Annotation

kegg
ID tcc:TCM_001089
description Leucine-rich repeat transmembrane protein kinase family protein isoform 1
nr
ID XP_007047920.1
description Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
swissprot
ID C0LGT1
description Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=2 SV=1
trembl
ID A0A061DIJ1
description Leucine-rich repeat transmembrane protein kinase family protein isoform 1 OS=Theobroma cacao GN=TCM_001089 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g10290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38251: 168361-178353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_130 0.0 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
2 Hb_015099_010 0.0593904482 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
3 Hb_000088_130 0.0707549342 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
4 Hb_002392_030 0.0711699677 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
5 Hb_133047_010 0.0720312376 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_009112_010 0.0729945325 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_174821_010 0.0766791394 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
8 Hb_004629_010 0.0771376834 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
9 Hb_000832_220 0.0798391965 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
10 Hb_000158_130 0.0799356431 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
11 Hb_008112_030 0.0819262762 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002301_080 0.0837364201 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
13 Hb_004659_080 0.0863096059 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_148909_030 0.0866036974 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
15 Hb_001454_280 0.0869606646 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
16 Hb_111985_080 0.0872717152 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
17 Hb_002174_020 0.0877164396 - - ring finger protein, putative [Ricinus communis]
18 Hb_003124_130 0.0881111871 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
19 Hb_030627_060 0.0887365822 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
20 Hb_000307_210 0.0890810682 - - Transportin 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000375_130 Hb_000375_130 Hb_015099_010 Hb_015099_010 Hb_000375_130--Hb_015099_010 Hb_000088_130 Hb_000088_130 Hb_000375_130--Hb_000088_130 Hb_002392_030 Hb_002392_030 Hb_000375_130--Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_000375_130--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_000375_130--Hb_009112_010 Hb_174821_010 Hb_174821_010 Hb_000375_130--Hb_174821_010 Hb_000832_220 Hb_000832_220 Hb_015099_010--Hb_000832_220 Hb_003029_130 Hb_003029_130 Hb_015099_010--Hb_003029_130 Hb_015099_010--Hb_002392_030 Hb_003124_130 Hb_003124_130 Hb_015099_010--Hb_003124_130 Hb_000209_070 Hb_000209_070 Hb_015099_010--Hb_000209_070 Hb_004627_060 Hb_004627_060 Hb_000088_130--Hb_004627_060 Hb_000088_130--Hb_174821_010 Hb_002107_070 Hb_002107_070 Hb_000088_130--Hb_002107_070 Hb_001454_280 Hb_001454_280 Hb_000088_130--Hb_001454_280 Hb_002301_080 Hb_002301_080 Hb_000088_130--Hb_002301_080 Hb_002392_030--Hb_133047_010 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_004629_010 Hb_004629_010 Hb_002392_030--Hb_004629_010 Hb_148909_030 Hb_148909_030 Hb_002392_030--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030 Hb_000162_280 Hb_000162_280 Hb_009112_010--Hb_000162_280 Hb_003633_070 Hb_003633_070 Hb_009112_010--Hb_003633_070 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_000470_070 Hb_000470_070 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_000613_080 Hb_000613_080 Hb_174821_010--Hb_000613_080 Hb_001617_060 Hb_001617_060 Hb_174821_010--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_174821_010--Hb_003966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.0674 76.1967 37.3946 46.5586 88.7508 85.714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7588 20.309 36.9187 60.8654 34.4642

CAGE analysis