Hb_000375_370

Information

Type -
Description -
Location Contig375: 333819-337630
Sequence    

Annotation

kegg
ID rcu:RCOM_0768440
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative (EC:2.5.1.54)
nr
ID XP_002531676.1
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P29976
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2
trembl
ID B9T0A7
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0768440 PE=4 SV=1
Gene Ontology
ID GO:0005739
description phospho-2-dehydro-3-deoxyheptonate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38272: 333837-333976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_370 0.0 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_005122_060 0.1119752257 - - unnamed protein product [Vitis vinifera]
3 Hb_031089_030 0.1242038718 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
4 Hb_001247_140 0.1244810323 - - -
5 Hb_006816_410 0.1276435064 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
6 Hb_006501_020 0.1295283074 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
7 Hb_000365_060 0.1330802183 - - 5'->3' exoribonuclease, putative [Ricinus communis]
8 Hb_015763_020 0.13886408 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
9 Hb_084429_010 0.1398757048 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
10 Hb_003157_010 0.1409252913 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
11 Hb_003299_080 0.1417233142 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
12 Hb_001396_260 0.1423374432 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
13 Hb_002078_420 0.1449570615 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
14 Hb_006588_050 0.145024346 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_000649_010 0.1458276133 - - PREDICTED: adagio protein 3 [Jatropha curcas]
16 Hb_007348_030 0.147509772 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
17 Hb_148209_020 0.1480096386 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
18 Hb_013753_010 0.1505168288 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
19 Hb_003866_020 0.1524323661 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007257_050 0.1528174719 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000375_370 Hb_000375_370 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_031089_030 Hb_031089_030 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_002105_080 Hb_002105_080 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_007257_050 Hb_007257_050 Hb_031089_030--Hb_007257_050 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_031089_030--Hb_001247_140 Hb_001247_140--Hb_003299_080 Hb_001247_140--Hb_000365_060 Hb_013753_010 Hb_013753_010 Hb_001247_140--Hb_013753_010 Hb_001247_140--Hb_005122_060 Hb_006816_410--Hb_002105_080 Hb_000023_060 Hb_000023_060 Hb_006816_410--Hb_000023_060 Hb_001433_190 Hb_001433_190 Hb_006816_410--Hb_001433_190 Hb_006816_410--Hb_006588_050 Hb_042487_010 Hb_042487_010 Hb_006816_410--Hb_042487_010 Hb_000640_200 Hb_000640_200 Hb_006501_020--Hb_000640_200 Hb_006501_020--Hb_006588_050 Hb_003157_010 Hb_003157_010 Hb_006501_020--Hb_003157_010 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_004899_070 Hb_004899_070 Hb_006501_020--Hb_004899_070 Hb_005843_040 Hb_005843_040 Hb_000365_060--Hb_005843_040 Hb_000365_060--Hb_002105_080 Hb_000365_060--Hb_007904_180 Hb_007348_030 Hb_007348_030 Hb_000365_060--Hb_007348_030 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.2547 58.5752 6.79603 5.80485 42.3576 89.023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3985 6.91335 10.9779 34.2132 5.0317

CAGE analysis