Hb_000375_390

Information

Type -
Description -
Location Contig375: 339592-346302
Sequence    

Annotation

kegg
ID rcu:RCOM_0768330
description poly-A binding protein, putative
nr
ID XP_002531675.1
description poly-A binding protein, putative [Ricinus communis]
swissprot
ID Q9FJN9
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1
trembl
ID B9T0A6
description Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0768330 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38273: 345042-345861 , PASA_asmbl_38274: 339794-346175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_390 0.0 - - poly-A binding protein, putative [Ricinus communis]
2 Hb_000023_260 0.0566327702 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
3 Hb_000061_180 0.0578668155 - - exonuclease, putative [Ricinus communis]
4 Hb_000035_090 0.0645379907 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
5 Hb_000230_400 0.0660941378 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000347_430 0.0698599021 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
7 Hb_021374_030 0.0707384301 - - hypothetical protein RCOM_0351490 [Ricinus communis]
8 Hb_004096_240 0.0714036166 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
9 Hb_002774_190 0.0720150862 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
10 Hb_000363_310 0.0721491681 - - DNA topoisomerase type I, putative [Ricinus communis]
11 Hb_000111_170 0.0756323437 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
12 Hb_065525_080 0.0768551535 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
13 Hb_183433_010 0.0769813286 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
14 Hb_001957_020 0.0771172217 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
15 Hb_000212_230 0.0777915728 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
16 Hb_000258_070 0.0790868915 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
17 Hb_028487_070 0.0804831153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_210 0.0806874915 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
19 Hb_001789_110 0.0809490549 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_001623_270 0.0811274179 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000375_390 Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000023_260--Hb_000061_180 Hb_000212_230 Hb_000212_230 Hb_000023_260--Hb_000212_230 Hb_001314_080 Hb_001314_080 Hb_000023_260--Hb_001314_080 Hb_133702_010 Hb_133702_010 Hb_000023_260--Hb_133702_010 Hb_007975_060 Hb_007975_060 Hb_000023_260--Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000230_400--Hb_000035_090 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86972 7.70714 11.5451 10.6525 8.16562 7.50886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53663 9.19279 5.14626 6.74327 13.9607

CAGE analysis