Hb_000376_110

Information

Type -
Description -
Location Contig376: 227791-237946
Sequence    

Annotation

kegg
ID bdi:100839207
description O-acyltransferase WSD1-like
nr
ID XP_003569566.1
description PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
swissprot
ID -
description -
trembl
ID I1NQN9
description Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0004144
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38362: 227348-237938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000376_110 0.0 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
2 Hb_000920_140 0.0954063603 - - annexin [Manihot esculenta]
3 Hb_023988_020 0.1097279087 - - PREDICTED: transmembrane protein 19 [Prunus mume]
4 Hb_004032_440 0.1123940334 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
5 Hb_001696_030 0.123666395 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000641_030 0.1240876272 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
7 Hb_007810_040 0.1261975054 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
8 Hb_002450_050 0.1284514652 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
9 Hb_004738_090 0.1305671729 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003304_080 0.136742825 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
11 Hb_001205_090 0.1383442491 - - PREDICTED: random slug protein 5 [Jatropha curcas]
12 Hb_001916_130 0.1423300024 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
13 Hb_017434_090 0.1436699766 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000376_150 0.1443059567 - - O-acyltransferase WSD1 [Gossypium arboreum]
15 Hb_000085_340 0.1472296332 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
16 Hb_001017_090 0.1493202148 - - -
17 Hb_002078_040 0.1505552186 - - protein with unknown function [Ricinus communis]
18 Hb_000416_100 0.1527011399 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
19 Hb_000258_430 0.1533342974 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_005754_020 0.1536706171 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]

Gene co-expression network

sample Hb_000376_110 Hb_000376_110 Hb_000920_140 Hb_000920_140 Hb_000376_110--Hb_000920_140 Hb_023988_020 Hb_023988_020 Hb_000376_110--Hb_023988_020 Hb_004032_440 Hb_004032_440 Hb_000376_110--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000376_110--Hb_001696_030 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040 Hb_000920_140--Hb_023988_020 Hb_000920_140--Hb_004032_440 Hb_000920_140--Hb_001696_030 Hb_000762_020 Hb_000762_020 Hb_000920_140--Hb_000762_020 Hb_019516_040 Hb_019516_040 Hb_000920_140--Hb_019516_040 Hb_023988_020--Hb_001696_030 Hb_023988_020--Hb_004032_440 Hb_000184_040 Hb_000184_040 Hb_023988_020--Hb_000184_040 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_017434_090 Hb_017434_090 Hb_004032_440--Hb_017434_090 Hb_004032_440--Hb_000184_040 Hb_004032_440--Hb_000762_020 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_007766_010 Hb_007766_010 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_003304_050 Hb_003304_050 Hb_000641_030--Hb_003304_050 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_003687_200 Hb_003687_200 Hb_000641_030--Hb_003687_200 Hb_000641_030--Hb_000920_140 Hb_000416_100 Hb_000416_100 Hb_000641_030--Hb_000416_100 Hb_003304_080 Hb_003304_080 Hb_007810_040--Hb_003304_080 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_007810_040--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_007810_040--Hb_043637_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
804.744 30.3856 13.0639 184.578 588.521 407.926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
520.066 163.203 299.568 35.0594 13.5994

CAGE analysis