Hb_000377_050

Information

Type -
Description -
Location Contig377: 99963-117336
Sequence    

Annotation

kegg
ID rcu:RCOM_1065770
description androgen induced inhibitor of proliferation (as3) / pds5, putative
nr
ID XP_012074803.1
description PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067KKH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08956 PE=4 SV=1
Gene Ontology
ID GO:0005634
description androgen induced inhibitor of proliferation

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38398: 100062-117292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_050 0.0 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
2 Hb_009476_090 0.0412697996 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
3 Hb_007283_030 0.0704824179 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
4 Hb_005832_010 0.0723771939 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
5 Hb_001959_270 0.0728460594 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_007818_040 0.0731216454 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
7 Hb_000703_130 0.0736245288 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_000579_010 0.0740766787 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
9 Hb_002784_010 0.0748427471 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
10 Hb_000025_710 0.0751145799 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
11 Hb_000083_070 0.0764537884 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
12 Hb_003943_020 0.077220485 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
13 Hb_179154_020 0.0774453981 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_002350_010 0.0775141596 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
15 Hb_004064_050 0.0777864553 - - Structural maintenance of chromosome, putative [Ricinus communis]
16 Hb_000205_260 0.077961873 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
17 Hb_027472_220 0.0780949066 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
18 Hb_003142_040 0.0782003424 - - Sf3a3 [Gossypium arboreum]
19 Hb_088144_020 0.0784897589 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
20 Hb_013405_160 0.0788179449 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000377_050 Hb_000377_050 Hb_009476_090 Hb_009476_090 Hb_000377_050--Hb_009476_090 Hb_007283_030 Hb_007283_030 Hb_000377_050--Hb_007283_030 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_001959_270 Hb_001959_270 Hb_000377_050--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_000377_050--Hb_007818_040 Hb_000703_130 Hb_000703_130 Hb_000377_050--Hb_000703_130 Hb_009476_090--Hb_005832_010 Hb_009476_090--Hb_000703_130 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_009476_090--Hb_001959_270 Hb_007283_030--Hb_007818_040 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_005832_010--Hb_004223_160 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_001959_270--Hb_007818_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150 Hb_002571_030 Hb_002571_030 Hb_007818_040--Hb_002571_030 Hb_007818_040--Hb_007576_230 Hb_007818_040--Hb_179154_020 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8166 19.4024 12.9104 7.07647 12.1522 12.3271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03043 5.49051 4.98147 14.4357 17.0446

CAGE analysis