Hb_000377_060

Information

Type -
Description -
Location Contig377: 121045-123803
Sequence    

Annotation

kegg
ID rcu:RCOM_1065460
description ARF GTPase activator, putative
nr
ID XP_002533397.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q8LFN9
description Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1
trembl
ID B9T578
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_1065460 PE=4 SV=1
Gene Ontology
ID GO:0005773
description probable adp-ribosylation factor gtpase-activating protein agd13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38399: 121176-123729 , PASA_asmbl_38400: 121656-123729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_060 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_001109_020 0.0655421926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029866_040 0.0655854964 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
4 Hb_011381_100 0.0763454357 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
5 Hb_003018_190 0.0778675087 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
6 Hb_003632_010 0.0790836702 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008311_010 0.0791498777 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
8 Hb_008453_090 0.0794150505 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
9 Hb_000046_110 0.0812668234 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
10 Hb_021409_030 0.0830132229 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
11 Hb_001141_280 0.0834769036 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
12 Hb_000009_160 0.0845048995 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
13 Hb_007943_090 0.0851647676 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
14 Hb_016065_010 0.0859204213 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
15 Hb_000205_270 0.0862684861 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
16 Hb_008289_060 0.0908578918 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
17 Hb_002056_060 0.0909611667 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_000963_180 0.0914355854 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
19 Hb_000023_340 0.0916708201 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
20 Hb_001829_060 0.0918937871 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000377_060 Hb_000377_060 Hb_001109_020 Hb_001109_020 Hb_000377_060--Hb_001109_020 Hb_029866_040 Hb_029866_040 Hb_000377_060--Hb_029866_040 Hb_011381_100 Hb_011381_100 Hb_000377_060--Hb_011381_100 Hb_003018_190 Hb_003018_190 Hb_000377_060--Hb_003018_190 Hb_003632_010 Hb_003632_010 Hb_000377_060--Hb_003632_010 Hb_008311_010 Hb_008311_010 Hb_000377_060--Hb_008311_010 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_000001_050 Hb_000001_050 Hb_029866_040--Hb_000001_050 Hb_029866_040--Hb_011381_100 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160 Hb_003055_120 Hb_003055_120 Hb_011381_100--Hb_003055_120 Hb_011381_100--Hb_005431_010 Hb_000510_320 Hb_000510_320 Hb_011381_100--Hb_000510_320 Hb_011381_100--Hb_000009_160 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_003632_010--Hb_000046_110 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003455_040 Hb_003455_040 Hb_003632_010--Hb_003455_040 Hb_008311_010--Hb_000046_110 Hb_008311_010--Hb_000001_050 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_008311_010--Hb_001109_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.07 11.0085 10.0322 15.8895 21.0289 32.326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.9391 58.8309 64.9751 12.5222 7.44911

CAGE analysis